Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 7.7e-193 677.9 669 100.0
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.3e-128 464.5 278 84.9
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 6.0e-121 439.1 279 79.6
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 8.2e-118 428.7 279 78.5
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 2.1e-113 414.1 279 76.0
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 1.8e-112 411.0 280 77.1
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 6.7e-112 409.1 279 75.3
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 5.7e-111 406.0 280 75.4
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 5.7e-111 406.0 280 75.7
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 2.0e-108 397.5 540 60.6
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 8.5e-107 392.1 279 72.8
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 2.5e-103 380.6 282 69.1
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 2.0e-63 248.1 269 50.6
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 5.7e-63 246.5 269 49.8
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 5.4e-61 240.0 268 48.1
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 5.4e-61 240.0 283 49.5
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 9.2e-61 239.2 283 48.4
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.7e-60 237.7 283 48.1
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 1.0e-59 235.7 276 46.4
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 1.1e-58 232.3 281 47.3
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.5e-58 231.9 149 81.9
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 4.3e-58 230.3 267 45.7
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 9.5e-58 229.2 131 85.5
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.2e-57 228.8 253 50.2
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 1.2e-57 228.8 266 48.1
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 3.6e-57 227.3 283 45.9
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 2.3e-56 224.6 281 44.5
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 8.9e-56 222.6 285 44.9
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 3.4e-55 220.7 268 45.5
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 7.5e-55 219.5 263 46.0
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 9.8e-55 219.2 266 45.5
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 2.0e-52 211.5 262 45.8
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 1.0e-51 209.1 288 43.1
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.3e-51 208.0 268 43.7
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 3.9e-51 207.2 268 43.7
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 3.3e-50 204.1 262 42.7
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.6e-49 200.7 268 42.5
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 3.6e-49 200.7 238 44.5
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.1e-48 199.1 271 42.4
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 4.0e-48 197.2 284 43.0
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 8.9e-48 196.1 263 42.2
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 4.4e-47 193.7 274 42.3
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 9.8e-47 192.6 273 42.1
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 1.1e-45 189.1 266 37.6
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 2.4e-45 188.0 272 43.8
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 5.4e-45 186.8 269 41.6
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.0e-43 182.6 202 47.5
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 8.6e-43 179.5 299 36.5
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 8.6e-43 179.5 268 39.2
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.5e-42 178.7 350 39.1
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 3.3e-42 177.6 267 39.7
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 4.3e-42 177.2 275 38.9
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 7.3e-42 176.4 273 39.6
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.1e-41 174.9 268 39.6
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 2.3e-40 171.4 197 44.2
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 4.0e-40 170.6 268 38.1
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 8.9e-40 169.5 260 36.9
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 1.7e-38 165.2 280 36.8
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.4e-37 162.2 89 87.6
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 3.2e-37 161.0 214 44.4
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 7.1e-37 159.8 194 44.8
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 9.2e-37 159.5 281 37.0
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 7.8e-36 156.4 281 37.7
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 2.3e-35 154.8 222 39.6
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 6.6e-35 153.3 170 44.1
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 4.3e-34 150.6 196 42.3
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 1.4e-32 145.6 345 36.8
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.8e-32 145.2 131 55.0
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 2.0e-31 141.7 195 38.5
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 7.8e-28 129.8 156 40.4
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 3.0e-27 127.9 151 48.3
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 3.8e-22 110.9 103 55.3
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 5.4e-21 107.1 194 41.2
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 3.5e-20 104.4 164 35.4
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 1.0e-19 102.8 182 33.5
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 3.0e-19 101.3 93 50.5
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 5.1e-19 100.5 116 39.7
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 7.3e-18 96.7 93 49.5
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.4e-16 92.4 131 38.2
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 9.0e-16 89.7 94 42.6
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.0e-15 88.6 93 45.2
Thhalv10023152m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 4.5e-15 87.4 60 80.0
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 5.8e-15 87.0 95 44.2
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.3e-14 85.9 93 44.1
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 4.8e-09 67.4 208 26.4
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 4.8e-09 67.4 190 27.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.1e-08 66.2 188 26.6
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 2.4e-08 65.1 166 25.3
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 6.9e-08 63.5 188 25.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.0e-08 63.2 193 25.9
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 9.0e-08 63.2 135 34.1
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 1.5e-07 62.4 188 24.5
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 2.6e-07 61.6 197 23.4
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 3.4e-07 61.2 165 24.2
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.8e-07 60.5 165 23.6
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 5.8e-07 60.5 197 23.4
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.3e-06 59.3 199 23.6
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 2.2e-06 58.5 186 25.3
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 2.9e-06 58.2 202 22.8
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 8.4e-06 56.6 149 29.5


User provided reference genes

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