Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.9e-308 1061.2 609 100.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.9e-260 901.4 610 87.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 7.2e-246 854.0 611 82.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 7.7e-240 833.9 616 75.8
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 6.1e-237 824.3 612 77.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.1e-235 820.1 613 81.4
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.5e-208 728.8 624 71.8
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-207 726.9 619 70.0
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 9.8e-203 710.7 609 69.6
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.2e-202 709.5 614 71.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.8e-201 706.4 608 68.9
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.8e-201 706.4 608 68.9
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.5e-200 702.2 616 69.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.7e-199 699.9 607 68.7
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-195 686.4 613 71.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.0e-195 686.4 639 67.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 9.8e-179 630.9 636 58.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-156 557.4 525 71.4
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.0e-103 381.7 419 54.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 8.8e-103 378.6 646 39.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.3e-101 372.5 674 39.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.1e-100 371.7 652 39.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.0e-98 365.2 644 40.4
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.3e-98 364.8 654 40.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.9e-98 363.6 623 40.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.9e-98 363.6 660 37.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.0e-98 362.8 645 39.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-97 361.7 669 37.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.9e-97 360.9 671 38.0
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 5.5e-97 359.4 621 38.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 7.2e-97 359.0 625 40.3
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.7e-96 357.1 700 38.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 6.8e-95 352.4 677 38.1
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 6.8e-95 352.4 624 43.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.2e-94 351.7 651 39.8
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.5e-94 351.3 649 38.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.6e-94 350.5 647 38.5
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.2e-93 347.4 716 40.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.1e-92 342.0 652 38.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.2e-91 341.7 682 38.3
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.5e-91 340.1 675 37.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.0e-90 336.3 651 38.7
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 8.6e-90 335.5 703 36.8
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.1e-89 335.1 671 38.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.5e-89 334.7 645 40.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.5e-89 332.8 648 38.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.4e-87 328.2 656 36.9
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.0e-87 326.6 640 38.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.2e-87 326.2 661 37.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 8.8e-87 325.5 676 36.1
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.3e-85 321.6 710 36.9
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.3e-85 321.6 679 36.5
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.8e-85 320.5 698 36.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.9e-85 319.7 673 38.6
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.3e-85 319.3 668 36.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-84 318.5 568 39.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.8e-84 317.8 626 38.3
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.9e-83 312.8 689 34.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 5.0e-82 309.7 701 35.8
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 6.6e-82 309.3 644 36.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 3.3e-81 307.0 701 35.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.6e-81 306.2 696 34.9
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.6e-80 303.5 701 35.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-79 301.6 701 35.1
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.2e-79 299.7 622 34.9
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 5.2e-79 299.7 701 34.8
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.7e-78 296.2 688 34.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 7.5e-78 295.8 359 59.1
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.3e-77 295.0 688 37.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.7e-77 294.7 646 35.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.9e-77 293.9 370 57.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.1e-76 292.0 683 33.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.4e-76 289.7 717 34.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.0e-76 289.3 606 35.5
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 9.2e-76 288.9 647 36.3
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 7.8e-75 285.8 784 31.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 7.8e-75 285.8 669 35.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.6e-74 282.7 649 34.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.9e-73 281.2 647 33.7
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.5e-73 280.8 684 32.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-71 274.2 652 35.3
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.5e-70 271.6 660 38.3
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.4e-70 270.4 679 38.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.4e-70 270.4 647 37.1
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.3e-69 268.5 351 57.8
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.7e-69 268.1 664 35.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.7e-69 266.9 704 36.5
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.9e-69 266.5 691 33.4
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.4e-68 265.0 828 29.1
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.9e-68 264.6 786 32.1
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.1e-68 263.5 650 35.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.4e-68 263.1 615 33.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.6e-67 261.5 745 31.5
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 7.8e-67 259.2 841 29.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.0e-66 257.3 810 34.1
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-65 255.4 709 32.4
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.1e-65 255.4 385 46.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-64 251.5 741 32.9
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.8e-64 250.8 508 42.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 6.2e-64 249.6 791 28.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.2e-62 245.4 327 48.3
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.4e-62 243.8 664 33.7
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.9e-61 240.7 578 32.5
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.2e-60 237.3 737 31.1
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 7.1e-60 236.1 635 33.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.2e-59 235.3 768 28.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.7e-59 234.2 327 46.5
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 4.6e-59 233.4 608 33.1
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.6e-59 233.4 862 29.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.1e-58 229.9 701 31.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.2e-56 225.3 577 33.3
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.6e-56 223.8 594 33.5
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.6e-54 217.6 690 29.9
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.4e-54 216.9 685 30.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 7.6e-54 216.1 667 33.3
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.2e-51 208.8 608 34.7
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.3e-50 204.5 896 29.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 8.6e-50 202.6 666 29.7
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.8e-48 197.6 611 34.4
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.8e-47 194.9 605 29.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.3e-45 188.7 599 31.1
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.9e-41 174.9 440 35.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 7.3e-41 172.9 696 28.9
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.0e-39 167.2 603 28.5
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-38 164.1 828 25.1
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 8.4e-37 159.5 593 33.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.4e-36 157.9 612 28.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 4.2e-36 157.1 216 44.4
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 8.7e-34 149.4 279 40.1
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.4e-31 141.4 331 36.3
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 3.1e-31 141.0 268 40.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.0e-30 138.3 624 27.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.6e-30 137.9 730 24.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 3.4e-30 137.5 145 49.0
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.9e-29 134.4 144 48.6
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.4e-29 132.9 621 27.7
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.9e-28 131.7 240 37.1
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.2e-28 131.0 630 28.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.8e-26 125.2 299 33.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.7e-26 123.2 159 45.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 1.1e-25 122.5 579 29.2
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.5e-25 122.1 303 30.7
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.3e-24 119.0 622 24.9
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.8e-24 117.1 327 35.5
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.4e-23 115.5 332 31.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.4e-23 115.5 639 27.4
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 3.1e-23 114.4 803 24.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.5e-22 112.1 144 45.8
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 3.2e-20 104.4 86 70.9
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 4.2e-20 104.0 153 35.9
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.1e-20 103.2 164 42.7
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 3.4e-14 84.3 144 43.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 6.5e-13 80.1 86 48.8
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.4e-12 79.0 324 29.3
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.9e-12 78.6 84 44.0
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 2.5e-12 78.2 80 51.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.3e-12 76.3 175 33.7
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-11 75.9 85 49.4
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-11 75.1 504 24.4
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.7e-11 74.7 518 24.5
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.6e-11 73.9 89 43.8
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.0e-10 71.2 88 44.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.7e-10 70.1 88 44.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.9e-09 68.6 82 41.5
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.9e-09 68.6 60 55.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.9e-09 68.6 79 44.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.7e-09 67.0 64 48.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 5.3e-07 60.5 101 40.6


User provided reference genes

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