Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 2.1e-272 941.8 479 100.0
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.1e-222 776.5 479 83.3
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.6e-195 686.4 470 76.8
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 8.5e-194 680.6 476 73.7
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 3.2e-193 678.7 467 73.4
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 9.4e-193 677.2 472 72.7
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 6.1e-192 674.5 460 73.7
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.8e-191 672.9 451 74.7
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 7.5e-190 667.5 462 73.4
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 2.8e-189 665.6 468 71.2
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.1e-188 663.7 487 69.6
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.1e-188 663.7 471 71.5
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 5.0e-186 654.8 464 72.8
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 5.0e-186 654.8 464 72.8
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 6.5e-186 654.4 473 71.2
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 7.0e-180 634.4 476 69.7
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.9e-164 583.2 369 79.1
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 9.5e-161 570.9 465 63.0
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 2.1e-160 569.7 454 65.4
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 1.4e-159 567.0 472 61.0
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.4e-159 567.0 458 62.7
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 5.2e-159 565.1 468 62.6
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 3.4e-158 562.4 453 62.9
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 3.7e-157 558.9 452 63.3
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 6.4e-157 558.1 462 62.3
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.4e-156 556.2 456 63.2
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 3.2e-156 555.8 467 61.7
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.2e-156 555.8 459 62.1
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 3.2e-156 555.8 457 62.1
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 4.1e-156 555.4 453 61.6
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 5.4e-156 555.1 463 61.3
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 9.2e-156 554.3 450 62.7
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 1.2e-155 553.9 451 62.7
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 1.2e-155 553.9 451 63.6
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 3.5e-155 552.4 454 61.5
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 4.6e-155 552.0 467 60.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 7.8e-155 551.2 459 60.8
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 7.8e-155 551.2 484 59.5
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-154 550.4 456 62.7
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 1.3e-154 550.4 465 61.7
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 3.0e-154 549.3 463 61.1
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.9e-154 548.9 456 62.5
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 5.1e-154 548.5 450 61.8
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 6.6e-154 548.1 463 60.7
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 6.6e-154 548.1 459 61.9
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 8.6e-154 547.7 456 61.0
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 1.1e-153 547.4 445 63.4
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.6e-153 545.0 475 60.8
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 5.6e-153 545.0 451 62.1
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 7.3e-153 544.7 452 61.9
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 1.2e-152 543.9 461 61.2
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.1e-152 543.1 435 64.6
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.1e-152 543.1 456 61.8
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 3.6e-152 542.3 468 60.7
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 4.7e-152 542.0 453 62.5
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 1.8e-151 540.0 456 62.5
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 4.0e-151 538.9 457 60.4
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 6.8e-151 538.1 454 61.0
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.2e-150 537.3 448 62.1
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 4.4e-150 535.4 473 58.8
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 7.6e-150 534.6 489 57.7
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 1.3e-149 533.9 459 60.6
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.7e-149 533.5 465 58.9
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.7e-149 533.5 470 58.7
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 2.2e-149 533.1 451 61.0
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 2.2e-149 533.1 465 58.5
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.1e-148 530.8 430 63.7
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.0e-146 524.2 466 59.9
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 5.1e-146 521.9 462 59.5
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 9.6e-145 517.7 433 62.6
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 2.0e-142 510.0 464 58.4
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.7e-141 506.9 419 62.5
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.2e-140 502.7 447 57.7
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 3.5e-139 499.2 560 50.2
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.3e-138 497.3 448 57.4
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 5.1e-138 495.4 439 60.4
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 3.3e-137 492.7 411 62.3
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 3.3e-137 492.7 450 58.0
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 1.6e-136 490.3 455 58.2
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 3.4e-134 482.6 449 56.3
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 5.1e-130 468.8 465 55.5
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.4e-127 460.7 540 49.1
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 4.0e-127 459.1 467 51.4
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 3.8e-125 452.6 458 54.4
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.2e-123 447.6 303 74.3
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 8.7e-122 441.4 480 51.9
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.1e-121 441.0 400 60.0
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 1.5e-121 440.7 457 53.6
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 7.4e-121 438.3 365 61.6
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.7e-117 427.2 457 53.2
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 6.5e-117 425.2 381 58.5
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 5.7e-113 412.1 450 51.1
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 2.4e-111 406.8 357 61.3
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 3.1e-111 406.4 341 61.3
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.6e-107 394.0 466 49.8
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 4.6e-107 392.5 511 46.2
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.0e-106 391.3 487 46.0
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 1.6e-104 384.0 319 60.8
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.6e-102 376.7 473 45.7
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 4.6e-99 365.9 341 58.1
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.0e-98 364.8 467 44.5
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 9.7e-97 358.2 322 57.5
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 4.1e-95 352.8 453 45.5
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 6.5e-93 345.5 462 43.1
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.6e-86 324.3 462 41.8
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 1.6e-86 324.3 306 55.6
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.3e-85 321.2 269 62.5
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.6e-83 314.3 267 59.6
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.0e-82 311.6 436 45.2
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 2.7e-78 297.0 459 43.8
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 3.8e-77 293.1 286 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 2.7e-70 270.4 342 44.4
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 2.2e-64 250.8 284 50.7
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.3e-53 214.2 756 25.9
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.9e-52 211.1 400 37.8
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 4.4e-49 199.9 451 32.2
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 4.9e-48 196.4 161 60.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-38 165.2 196 51.5
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 3.3e-36 157.1 139 59.0
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.7e-29 134.8 174 48.3
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 8.6e-29 132.5 428 26.9
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 4.7e-27 126.7 95 62.1
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 4.6e-22 110.2 112 51.8
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 6.0e-22 109.8 96 60.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.8e-22 109.4 77 64.9
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.1e-20 105.5 67 71.6
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 1.9e-15 88.2 325 27.4
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 3.0e-13 80.9 222 32.0
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 3.6e-11 73.9 62 61.3
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.0e-09 68.2 100 43.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 5.5e-07 60.1 37 67.6


User provided reference genes

Program Settings