Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 6.5e-227 790.4 406 100.0
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.4e-213 745.3 406 93.6
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 5.3e-213 744.2 428 90.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 2.6e-212 741.9 406 93.3
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 3.9e-208 728.0 408 91.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 3.3e-207 724.9 408 91.2
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.1e-205 719.9 407 90.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.4e-205 719.5 406 90.4
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 7.7e-204 713.8 409 91.0
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 7.2e-202 707.2 406 88.7
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 7.2e-202 707.2 411 89.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.3e-190 669.8 407 84.3
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.4e-173 612.5 388 82.0
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 3.3e-170 602.1 405 76.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 1.4e-168 596.7 411 74.2
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 2.3e-168 595.9 406 76.4
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 3.4e-167 592.0 406 75.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.4e-167 591.7 407 76.2
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.7e-166 589.7 407 76.4
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.9e-166 589.0 409 75.6
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 3.7e-166 588.6 406 74.1
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.9e-165 586.3 413 73.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.4e-165 584.7 407 75.2
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.6e-164 583.2 409 74.6
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.6e-164 583.2 414 74.4
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.0e-164 582.8 407 75.9
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.3e-163 579.3 408 73.3
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 3.9e-163 578.6 412 74.5
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 8.6e-163 577.4 407 72.2
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.6e-163 577.4 407 73.2
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.1e-162 577.0 414 74.2
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.5e-162 576.6 413 73.8
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.5e-162 576.6 406 74.1
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.5e-162 576.6 406 72.9
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.9e-162 576.2 407 73.0
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.9e-162 576.2 406 74.9
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 3.3e-162 575.5 390 76.2
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.3e-162 575.5 407 73.7
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.3e-162 575.1 407 72.7
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 5.6e-162 574.7 408 73.5
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 7.3e-162 574.3 406 75.1
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-161 573.5 406 73.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-161 573.2 407 72.7
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.8e-161 572.4 407 71.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 4.7e-161 571.6 407 73.5
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 8.1e-161 570.9 390 75.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.1e-161 570.9 412 72.3
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 8.1e-161 570.9 406 73.6
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.1e-160 570.5 413 72.9
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 4.0e-160 568.5 408 70.6
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.2e-160 568.2 407 70.5
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 7.5e-159 564.3 408 73.0
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.3e-158 563.5 409 70.7
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 3.7e-158 562.0 347 80.4
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 6.4e-158 561.2 406 71.7
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.1e-157 560.5 408 70.3
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.1e-157 560.5 408 70.3
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.9e-157 559.7 407 72.0
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 2.4e-157 559.3 406 69.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 4.1e-157 558.5 407 70.3
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 5.4e-157 558.1 406 70.7
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 5.4e-157 558.1 405 69.6
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 5.4e-157 558.1 376 75.8
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 9.2e-157 557.4 396 72.5
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.2e-156 557.0 408 70.1
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 3.5e-156 555.4 408 69.9
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 6.0e-156 554.7 410 69.3
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 7.8e-156 554.3 406 68.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.0e-155 553.9 405 70.6
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 3.0e-155 552.4 404 70.0
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 5.1e-155 551.6 366 75.7
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.1e-154 550.4 519 59.7
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.1e-154 550.4 341 79.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.5e-154 550.1 368 75.0
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.9e-154 549.7 372 73.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.5e-154 549.3 403 70.5
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 7.3e-154 547.7 407 69.3
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 8.1e-153 544.3 403 69.2
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.1e-152 543.9 368 74.5
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.8e-152 543.1 380 72.6
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 2.4e-152 542.7 355 75.2
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.4e-152 542.7 361 74.2
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.2e-151 540.4 356 73.9
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 9.9e-151 537.3 425 64.9
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.3e-150 537.0 404 66.8
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.4e-150 534.6 368 72.8
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 8.4e-150 534.3 385 69.6
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.4e-149 532.7 407 67.8
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 5.1e-147 525.0 371 69.8
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 6.2e-145 518.1 418 65.8
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 3.4e-143 512.3 407 66.3
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 2.1e-140 503.1 409 67.0
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 3.5e-140 502.3 374 68.7
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.6e-140 501.9 408 65.2
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 6.0e-140 501.5 376 69.1
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.8e-140 501.1 348 71.3
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 4.3e-138 495.4 413 65.4
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.3e-137 493.8 368 69.0
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 9.0e-136 487.6 307 78.8
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 4.5e-135 485.3 351 69.2
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 4.3e-130 468.8 285 81.1
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 8.1e-129 464.5 346 65.6
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.1e-112 409.1 462 50.9
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 8.5e-110 401.4 361 57.1
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 5.3e-80 302.4 256 68.0
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 5.0e-78 295.8 342 50.6
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 4.0e-75 286.2 268 57.5
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.7e-73 280.8 245 59.6
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 8.9e-67 258.5 161 77.6
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.5e-66 257.7 233 60.9
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.8e-64 250.8 204 61.3
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.6e-63 247.7 230 61.3
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 6.1e-60 235.7 268 53.4
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.2e-52 209.1 231 51.5
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 8.9e-51 205.3 178 64.0
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.9e-48 197.6 206 53.4
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 6.2e-44 182.6 111 81.1
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 4.4e-42 176.4 394 34.5
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.4e-41 172.6 111 75.7
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.9e-40 171.0 161 60.9
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.1e-40 169.9 98 79.6
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.3e-38 164.1 111 71.2
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 5.1e-38 162.9 421 30.6
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.9e-37 161.0 100 84.0
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 5.8e-34 149.4 324 31.8
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.8e-33 146.7 152 57.2
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.1e-32 145.2 297 31.6
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.1e-32 142.5 166 51.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.2e-32 142.1 166 51.2
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 4.2e-24 116.7 81 74.1
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 4.2e-24 116.7 81 74.1
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 7.8e-23 112.5 209 32.5
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.9e-22 110.2 260 31.9
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 5.1e-22 109.8 78 74.4
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.0e-19 99.0 60 81.7
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.4e-16 90.9 66 71.2
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 4.2e-16 90.1 196 31.1
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.2e-16 90.1 49 83.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-15 88.2 53 83.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.7e-15 87.4 55 80.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.6e-15 86.7 52 82.7
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 6.0e-15 86.3 130 38.5
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 7.9e-15 85.9 62 64.5
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.0e-14 85.5 51 72.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 5.1e-14 83.2 75 58.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.1e-14 83.2 69 58.0
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.7e-14 82.8 52 80.8
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.7e-14 82.8 50 82.0
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 6.7e-14 82.8 56 75.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.5e-13 80.9 85 52.9
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.6e-13 79.7 48 83.3
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.6e-13 79.7 48 83.3
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.8e-12 77.4 50 66.0
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 1.1e-08 65.5 40 82.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.4e-08 65.1 46 71.7
A09p64000 Brassica napus HOM05D000101 ORTHO05D000089 3.2e-08 63.9 36 86.1
BraA09t41750Z Brassica rapa HOM05D000101 ORTHO05D000089 3.2e-08 63.9 36 86.1


User provided reference genes

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