Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 7.5e-204 713.8 394 100.0
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 2.3e-165 585.9 380 83.7
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 3.2e-138 495.7 407 70.0
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 1.2e-137 493.8 407 69.5
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 2.1e-137 493.0 405 69.9
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 1.1e-135 487.3 406 73.9
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 9.0e-133 477.6 438 64.6
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 5.8e-132 474.9 392 71.7
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 1.6e-121 440.3 390 65.6
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 2.4e-117 426.4 309 81.9
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 1.7e-115 420.2 400 65.8
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 7.7e-84 315.1 327 57.5
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 2.8e-81 306.6 351 51.6
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 1.0e-80 304.7 312 59.3
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 2.2e-78 297.0 287 58.2
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 3.7e-78 296.2 358 50.0
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 4.9e-78 295.8 293 57.3
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 1.4e-77 294.3 345 52.8
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 2.0e-76 290.4 308 52.3
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 4.5e-76 289.3 356 50.6
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 6.1e-73 278.9 291 52.9
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 8.0e-73 278.5 302 56.3
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 1.8e-72 277.3 375 46.9
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 8.9e-72 275.0 280 55.0
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 1.5e-71 274.2 287 54.7
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 4.4e-71 272.7 330 47.3
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 4.1e-69 266.2 394 42.6
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 2.3e-67 260.4 301 51.2
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.6e-66 255.8 291 51.9
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 9.5e-66 255.0 291 50.5
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 6.2e-65 252.3 303 55.4
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.8e-64 250.8 307 48.5
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 1.2e-63 248.1 302 50.7
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.7e-62 243.0 231 58.9
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 6.4e-62 242.3 250 56.0
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.6e-60 237.7 276 49.3
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 6.0e-60 235.7 429 43.6
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.7e-59 234.2 291 48.1
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 3.0e-59 233.4 411 44.3
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.9e-59 233.0 299 47.8
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 8.6e-59 231.9 299 47.8
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 1.1e-56 224.9 303 47.2
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 2.3e-56 223.8 278 49.6
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 2.6e-55 220.3 303 46.5
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 4.4e-55 219.5 303 46.2
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 4.1e-53 213.0 238 51.7
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 1.2e-52 211.5 264 48.1
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 1.6e-52 211.1 287 46.0
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 2.3e-51 207.2 334 41.3
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 5.6e-50 202.6 235 51.5
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 9.5e-50 201.8 313 47.3
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 6.2e-49 199.1 354 39.0
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 1.4e-48 198.0 294 45.9
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 1.8e-48 197.6 303 43.9
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 4.4e-47 193.0 287 43.9
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 7.6e-47 192.2 314 40.1
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 8.4e-46 188.7 294 43.5
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 4.2e-45 186.4 332 37.7
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 7.8e-44 182.2 253 45.1
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 1.7e-43 181.0 167 60.5
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 1.4e-40 171.4 167 56.3
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 3.1e-40 170.2 287 39.4
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 7.6e-39 165.6 308 39.3
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 1.6e-36 157.9 154 58.4
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 1.0e-35 155.2 167 55.1
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 1.0e-35 155.2 186 49.5
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 1.6e-33 147.9 197 47.2
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 5.3e-32 142.9 168 47.0
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 2.7e-28 130.6 135 52.6
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 2.3e-27 127.5 277 33.9
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 5.6e-26 122.9 185 35.7
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 9.6e-26 122.1 178 36.5
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 5.3e-24 116.3 233 45.1
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 3.8e-22 110.2 109 58.7
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 2.5e-21 107.5 273 30.0
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 3.9e-19 100.1 326 32.5
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 5.6e-18 96.3 125 43.2
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 2.0e-15 87.8 123 41.5
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 3.4e-15 87.0 111 52.3
Mapoly0067s0009 Marchantia polymorpha HOM05D007593 ORTHO05D009686 1.3e-11 75.1 268 20.5
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.9e-10 71.2 295 20.3
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 1.6e-09 68.2 64 62.5
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 1.8e-08 64.7 114 51.8
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 2.4e-08 64.3 59 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 3.1e-08 63.9 185 22.7
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 9.0e-08 62.4 59 52.5
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 1.7e-06 58.2 97 42.3
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 6.5e-06 56.2 85 43.5


User provided reference genes

Program Settings