Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1789.6 925 100.0
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 9.7e-162 575.1 1297 35.9
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 1.1e-160 571.6 1306 35.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 4.1e-160 569.7 1320 35.4
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 5.3e-160 569.3 1288 35.4
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 3.5e-159 566.6 1282 36.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 3.5e-159 566.6 1282 36.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 1.3e-158 564.7 1310 34.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 2.5e-157 560.5 1313 35.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 3.2e-157 560.1 1285 35.6
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 4.2e-157 559.7 1287 35.5
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 5.5e-157 559.3 1287 35.4
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 7.2e-157 558.9 1315 35.3
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 4.7e-156 556.2 1303 35.5
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 1.7e-145 521.2 1327 33.1
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.5e-135 486.9 985 38.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 1.6e-132 478.0 1109 35.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 3.9e-126 456.8 1343 30.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 1.1e-125 455.3 1293 30.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 1.5e-125 454.9 1356 30.6
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.1e-124 451.1 1283 30.4
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 3.1e-123 447.2 1352 30.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 2.6e-122 444.1 1353 30.7
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 4.4e-122 443.4 1347 30.2
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 1.7e-121 441.4 1291 30.1
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 3.2e-120 437.2 1322 29.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 3.2e-120 437.2 1274 30.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 9.2e-120 435.6 1328 30.0
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 7.8e-119 432.6 1352 29.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 5.1e-118 429.9 1340 29.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 1.1e-117 428.7 1361 29.9
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.9e-117 427.9 1316 29.6
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 3.3e-117 427.2 1364 29.4
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 4.7e-116 423.3 1339 29.1
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 1.1e-115 422.2 1247 29.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 6.8e-115 419.5 1359 29.2
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 1.5e-114 418.3 1334 28.9
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 5.8e-114 416.4 1350 28.3
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.3e-113 415.2 1356 29.1
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 4.9e-113 413.3 1374 28.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 1.4e-112 411.8 1354 28.4
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 1.4e-112 411.8 1372 28.6
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 2.4e-112 411.0 1369 29.3
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 2.4e-112 411.0 1351 28.6
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 3.2e-112 410.6 1166 30.4
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 4.1e-112 410.2 1328 28.7
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 4.1e-112 410.2 1356 28.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 5.4e-112 409.8 1359 28.2
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 1.2e-111 408.7 1348 28.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 2.7e-111 407.5 1367 29.1
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 2.7e-111 407.5 1361 28.9
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 3.5e-111 407.1 1359 28.0
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 4.6e-111 406.8 1179 31.0
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 6.0e-111 406.4 1164 30.8
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 7.8e-111 406.0 1348 29.5
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 1.0e-110 405.6 1347 29.0
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 2.3e-110 404.4 1221 29.2
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 5.1e-110 403.3 1159 30.2
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 1.1e-109 402.1 1341 28.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 1.5e-109 401.7 1360 28.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 2.5e-109 401.0 1167 30.7
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 7.3e-109 399.4 1335 28.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.2e-108 398.7 1191 30.6
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 1.8e-107 394.8 1352 28.4
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 1.5e-106 391.7 1360 27.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 1.5e-106 391.7 1367 27.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 9.9e-106 389.0 1160 29.9
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 2.2e-105 387.9 1132 30.3
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 4.9e-105 386.7 1307 29.5
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 8.4e-105 386.0 1147 30.4
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 2.4e-104 384.4 1166 30.1
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 5.4e-104 383.3 1341 27.4
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 9.3e-104 382.5 1166 29.9
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 1.2e-103 382.1 1112 29.9
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 1.6e-103 381.7 1127 29.8
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 3.5e-103 380.6 968 32.3
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 4.6e-103 380.2 1151 29.6
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 7.8e-103 379.4 1046 30.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 1.3e-102 378.6 1336 27.6
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 3.9e-102 377.1 1160 29.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 6.6e-102 376.3 1426 27.3
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 8.7e-102 375.9 1368 27.2
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 1.5e-101 375.2 1364 28.2
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 5.6e-101 373.2 1143 29.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 1.6e-100 371.7 1166 29.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.8e-100 370.9 1126 29.9
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 2.8e-100 370.9 1229 27.7
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 4.8e-100 370.2 1348 27.6
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-99 369.0 1367 27.3
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 3.1e-99 367.5 1122 29.0
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 9.0e-99 365.9 1114 29.9
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 9.0e-99 365.9 1134 30.2
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.7e-97 361.7 1058 31.2
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 4.6e-87 327.0 892 31.2
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 4.0e-83 313.9 890 30.7
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.3e-81 308.9 1070 28.8
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 9.7e-77 292.7 570 37.4
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 5.7e-69 266.9 1056 26.9
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 3.4e-66 257.7 949 27.8
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-65 255.0 612 33.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.8e-60 238.0 1385 24.5
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 6.3e-60 236.9 599 31.6
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 9.4e-56 223.0 1365 24.2
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 8.0e-55 219.9 1413 23.5
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.0e-49 203.0 1194 23.5
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 5.5e-48 197.2 643 29.5
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 5.5e-40 170.6 381 34.4
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 1.5e-37 162.5 292 41.1
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.3e-36 159.5 464 28.7
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.4e-35 156.0 344 34.3
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 2.3e-33 148.7 461 28.6
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.9e-28 131.0 145 48.3
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 2.3e-25 122.1 631 23.5
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.6e-23 115.9 300 31.7
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 2.8e-23 115.2 601 24.6
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.6e-18 99.4 101 54.5
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.0e-17 96.7 232 33.6
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 1.4e-14 86.3 152 36.2
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.9e-12 78.6 55 69.1
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.7e-10 72.0 59 54.2
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.9e-09 68.2 55 60.0
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 8.9e-06 57.0 40 67.5


User provided reference genes

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