Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.5e-47 192.6 102 100.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.5e-42 175.3 106 87.7
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.2e-42 174.5 106 86.8
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.7e-41 171.8 106 86.8
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.6e-41 171.4 107 87.9
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.1e-41 170.6 106 85.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 8.8e-40 166.8 106 83.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.1e-37 157.9 106 80.2
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.1e-37 157.9 106 80.2
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.6e-36 156.0 96 87.5
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.9e-36 154.1 106 79.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 2.2e-35 152.1 106 81.1
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.2e-35 152.1 106 79.2
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.2e-34 147.9 106 74.5
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 7.2e-34 147.1 106 78.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.7e-33 145.2 116 71.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.6e-33 144.8 106 75.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.4e-32 142.9 130 66.2
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.8e-32 140.6 106 72.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 5.7e-31 137.5 125 66.4
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.4e-29 132.9 108 72.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.1e-29 131.3 108 71.3
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.9e-28 127.5 106 68.9
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 7.7e-28 127.1 109 67.9
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.8e-27 124.8 80 85.0
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 8.6e-27 123.6 80 83.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.6e-27 123.6 96 67.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 2.5e-26 122.1 96 66.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.2e-26 121.3 96 67.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 9.5e-26 120.2 94 67.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 9.5e-26 120.2 94 67.0
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.4e-24 116.3 93 66.7
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.0e-24 115.2 92 66.3
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.0e-23 112.5 96 61.5
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 7.5e-23 110.5 92 63.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.8e-23 110.2 97 63.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.3e-22 107.5 100 58.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-21 106.7 92 63.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.4e-21 106.3 98 58.2
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 9.2e-21 103.6 92 62.0
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 9.2e-21 103.6 98 63.3
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.6e-20 102.8 102 56.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.0e-20 102.4 106 56.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.7e-20 102.1 97 58.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.5e-20 101.7 98 57.1
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 4.5e-20 101.3 102 56.9
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.9e-20 100.9 98 57.1
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 7.8e-20 100.5 91 61.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.0e-19 100.1 93 60.2
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.3e-19 99.8 98 59.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-19 99.8 97 52.6
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.3e-19 99.0 101 59.4
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 5.0e-19 97.8 94 59.6
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 6.6e-19 97.4 98 54.1
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.6e-19 97.4 100 54.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 1.1e-18 96.7 92 55.4
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-18 96.7 111 48.6
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.5e-18 96.3 95 57.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.5e-18 96.3 106 52.8
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 97 51.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 97 51.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.5e-18 95.5 80 65.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 3.3e-18 95.1 67 73.1
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.3e-18 95.1 102 52.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.3e-18 94.7 94 55.3
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.6e-18 94.4 106 48.1
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.6e-18 94.4 93 55.9
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.6e-18 94.4 94 55.3
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 7.3e-18 94.0 103 53.4
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 7.3e-18 94.0 104 53.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 9.5e-18 93.6 96 57.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.8e-17 92.0 105 54.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.8e-17 92.0 91 53.8
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.1e-17 90.9 92 53.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 8.0e-17 90.5 94 54.3
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.0e-17 90.5 107 47.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.0e-16 90.1 95 53.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.4e-16 89.7 91 52.7
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.4e-16 89.7 92 58.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.8e-16 89.4 102 52.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.8e-16 89.4 97 48.5
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.3e-16 89.0 97 50.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.3e-16 89.0 99 48.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.3e-16 89.0 89 52.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.3e-16 89.0 95 53.7
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.0e-16 88.6 104 52.9
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.0e-16 88.2 57 77.2
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.2e-16 87.8 81 58.0
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 5.2e-16 87.8 94 51.1
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 6.8e-16 87.4 98 50.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 6.8e-16 87.4 98 50.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 8.9e-16 87.0 98 51.0
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.9e-16 87.0 74 58.1
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.5e-15 86.3 75 60.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-15 86.3 89 50.6
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.0e-15 85.9 107 52.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.0e-15 85.9 94 50.0
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 5.8e-15 84.3 87 52.9
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 7.5e-15 84.0 69 58.0
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 7.5e-15 84.0 70 58.6
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 9.8e-15 83.6 89 48.3
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 9.8e-15 83.6 90 52.2
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.8e-15 83.6 92 50.0
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.3e-14 83.2 72 58.3
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.3e-14 83.2 72 56.9
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.7e-14 82.8 106 50.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.7e-14 82.8 93 48.4
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.9e-14 82.0 77 54.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.7e-14 81.6 72 56.9
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.7e-14 81.6 90 50.0
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.7e-14 81.6 80 56.2
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 6.4e-14 80.9 90 50.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 6.4e-14 80.9 82 53.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 8.3e-14 80.5 89 50.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 8.3e-14 80.5 60 65.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.4e-13 79.7 72 58.3
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-13 79.7 93 49.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-13 79.7 93 49.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.4e-13 79.7 71 56.3
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.4e-13 79.7 90 50.0
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 2.4e-13 79.0 87 54.0
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.4e-13 79.0 90 47.8
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.4e-13 79.0 75 53.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.2e-13 78.6 83 57.8
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 4.1e-13 78.2 90 50.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.1e-13 78.2 95 48.4
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 4.1e-13 78.2 105 41.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.4e-13 77.8 88 47.7
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 9.2e-13 77.0 73 58.9
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 9.2e-13 77.0 96 42.7
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 9.2e-13 77.0 106 47.2
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 9.2e-13 77.0 67 55.2
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.0e-12 75.9 92 46.7
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 3.5e-12 75.1 62 58.1
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 6.0e-12 74.3 74 52.7
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.3e-11 73.2 53 67.9
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.7e-11 72.8 93 48.4
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.9e-11 71.6 85 49.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.9e-11 71.6 63 50.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.5e-10 69.7 88 46.6
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.9e-10 69.3 83 45.8
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 3.3e-10 68.6 92 47.8
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 4.3e-10 68.2 88 40.9
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.3e-10 67.4 81 46.9
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.2e-09 66.6 69 56.5
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.8e-09 65.5 77 45.5
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.7e-09 64.7 95 42.1
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 4.7e-09 64.7 107 43.0
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.2e-09 64.3 75 48.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.3e-08 62.4 91 44.0
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 4.0e-08 61.6 101 41.6
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.2e-07 60.1 91 41.8
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 2.6e-07 58.9 105 41.9
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 4.4e-07 58.2 72 48.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-06 56.6 71 47.9
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.3e-06 56.6 91 40.7
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.2e-06 55.8 102 40.2
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.7e-06 55.1 57 57.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 4.9e-06 54.7 70 44.3
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.4e-06 54.3 75 41.3


User provided reference genes

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