Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0806 Capsella rubella HOM05D006208 ORTHO05D007606 3.0e-135 485.3 274 100.0
AL1G19150 Arabidopsis lyrata HOM05D006208 ORTHO05D007606 1.1e-108 397.1 274 81.8
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 1.2e-107 393.7 240 85.8
CARHR008630 Cardamine hirsuta HOM05D006208 ORTHO05D007606 8.0e-104 380.9 239 84.9
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 1.2e-99 367.1 277 72.9
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 1.0e-98 364.0 279 73.5
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 1.3e-98 363.6 237 81.4
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 2.9e-98 362.5 237 81.0
Thhalv10008513m.g Eutrema salsugineum HOM05D006208 ORTHO05D007606 1.1e-92 344.0 274 70.1
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 2.6e-86 322.8 278 66.5
Aa31sc449G40 Aethionema arabicum HOM05D006208 ORTHO05D007606 7.0e-84 314.7 274 63.1
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 3.6e-72 275.8 240 62.9
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 4.4e-70 268.9 236 60.2
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 1.4e-68 263.8 235 56.6
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 7.8e-67 258.1 241 56.8
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.3e-66 257.3 220 60.5
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 2.3e-66 256.5 233 59.2
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 3.0e-66 256.1 220 60.0
Sabra13G0059000 Salix brachista HOM05D006208 ORTHO05D007606 3.9e-66 255.8 234 56.0
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 6.6e-66 255.0 220 60.5
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 6.6e-66 255.0 229 58.5
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 1.9e-65 253.4 233 57.9
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 3.3e-65 252.7 236 57.2
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 1.2e-64 250.8 228 54.8
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 3.6e-64 249.2 231 57.1
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 4.0e-63 245.7 230 54.8
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 6.8e-63 245.0 236 56.8
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 1.5e-62 243.8 234 55.1
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 2.2e-61 240.0 231 55.4
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 2.2e-61 240.0 231 55.4
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 2.9e-61 239.6 234 54.3
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 3.8e-61 239.2 233 56.2
Eucgr.K01547 Eucalyptus grandis HOM05D006208 ORTHO05D007606 3.8e-61 239.2 238 54.2
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 6.4e-61 238.4 231 55.8
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.4e-61 238.4 235 54.9
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 1.9e-60 236.9 234 53.0
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 3.2e-60 236.1 237 53.6
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 4.1e-60 235.7 221 57.0
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 9.2e-60 234.6 241 52.3
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 1.2e-59 234.2 235 53.2
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.2e-59 234.2 235 54.5
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 1.2e-59 234.2 237 51.9
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 3.5e-59 232.6 256 50.4
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.0e-59 231.9 235 54.0
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 1.0e-58 231.1 232 54.7
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 8.6e-58 228.0 240 52.9
unitig_0.g581 Utricularia gibba HOM05D006208 ORTHO05D007606 1.1e-57 227.6 237 53.6
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 2.5e-57 226.5 238 50.0
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 4.3e-57 225.7 238 50.4
Peaxi162Scf00146g00097 Petunia axillaris HOM05D006208 ORTHO05D007606 7.3e-57 224.9 233 49.8
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.2e-56 224.2 234 50.9
Migut.B00931 Erythranthe guttata HOM05D006208 ORTHO05D007606 2.1e-56 223.4 230 51.7
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 4.7e-56 222.2 236 51.3
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 2.4e-55 219.9 238 52.1
Phvul.001G107700 Phaseolus vulgaris HOM05D006208 ORTHO05D007606 4.0e-55 219.2 181 61.3
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 5.2e-55 218.8 237 48.1
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 1.2e-54 217.6 242 48.8
Nn8g39480 Nelumbo nucifera HOM05D006208 ORTHO05D007606 2.6e-54 216.5 232 50.9
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 3.4e-54 216.1 233 50.6
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 7.6e-54 214.9 243 51.9
Psat3g085200 Pisum sativum HOM05D006208 ORTHO05D007606 1.3e-53 214.2 185 59.5
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 6.4e-53 211.8 230 50.0
SGA_v2.0_scaffold66G22407 Striga asiatica HOM05D006208 ORTHO05D007606 6.4e-53 211.8 245 47.3
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 1.1e-52 211.1 242 50.8
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 1.4e-52 210.7 240 50.0
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 3.2e-52 209.5 239 50.2
MSTRG.19726 Avicennia marina HOM05D006208 ORTHO05D007606 4.2e-52 209.1 237 47.3
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 9.3e-52 208.0 291 44.0
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 1.6e-51 207.2 236 51.7
SalBow6G5221 Salvia bowleyana HOM05D006208 ORTHO05D007606 1.0e-50 204.5 247 43.7
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 1.3e-50 204.1 246 47.6
Peaxi162Scf00146g00107 Petunia axillaris HOM05D006208 ORTHO05D007606 3.9e-50 202.6 209 49.3
Peaxi162Scf62544g00003 Petunia axillaris HOM05D006208 ORTHO05D007606 3.9e-50 202.6 209 49.3
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 5.1e-50 202.2 236 46.6
MBI19_g04334_MAGBIO Magnolia biondii HOM05D006208 ORTHO05D007606 2.1e-48 196.8 228 45.2
C05p06800 Brassica napus HOM05D006208 ORTHO05D007606 1.1e-47 194.5 139 74.8
BolC5t29439H Brassica oleracea HOM05D006208 ORTHO05D007606 1.4e-47 194.1 139 74.8
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 1.8e-47 193.7 219 50.7
CsaV3_4G029050 Cucumis sativus L. HOM05D006208 ORTHO05D007606 3.1e-47 193.0 175 57.1
ECA232G0512 Erigeron canadensis HOM05D006208 ORTHO05D007606 9.0e-47 191.4 233 45.1
DCAR_020701 Daucus carota HOM05D006208 ORTHO05D007606 7.6e-46 188.3 236 47.5
HPP92_022884 Vanilla planifolia HOM05D006208 ORTHO05D007606 2.9e-45 186.4 211 48.3
Ah.12g062010 Amaranthus hybridus HOM05D006208 ORTHO05D007606 1.4e-44 184.1 186 53.8
Sed0009124 Sechium edule HOM05D006208 ORTHO05D007606 1.4e-44 184.1 212 49.1
ATR0068G109 Amborella trichopoda HOM05D006208 ORTHO05D007606 5.4e-44 182.2 228 44.7
arahy.Tifrunner.gnm1.ann1.2NMK5X Arachis hypogaea HOM05D006208 ORTHO05D007606 5.4e-44 182.2 192 52.1
Os01g0814700 Oryza sativa ssp. japonica HOM05D006208 ORTHO05D007606 2.4e-39 166.8 189 48.7
Zm00001eb149890 Zea mays HOM05D006208 ORTHO05D007606 3.4e-38 162.9 187 48.1
HanXRQChr09g0255371 Helianthus annuus HOM05D006208 ORTHO05D007606 9.9e-38 161.4 195 48.7
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 1.1e-36 157.9 159 52.2
SEGI_27241 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 1.2e-35 154.5 231 40.7
Lsat_1_v5_gn_4_159701 Lactuca sativa HOM05D006208 ORTHO05D007606 2.3e-34 150.2 202 43.6
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 2.1e-32 143.7 163 49.7
CDE09G0594 Ceratophyllum demersum HOM05D002946 ORTHO05D007606 4.5e-30 136.0 177 45.8
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-29 133.7 82 82.9
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 2.2e-29 133.7 82 82.9
Prupe.7G018500 Prunus persica HOM05D006208 ORTHO05D007606 1.4e-28 131.0 140 50.0
Pp3c18_14450 Physcomitrium patens HOM05D006208 ORTHO05D007606 6.0e-27 125.6 237 30.0
Rhsim03G0045600 Rhododendron simsii HOM05D006208 ORTHO05D007606 5.1e-26 122.5 155 45.8
TPR.G7831 Trifolium pratense HOM05D006208 ORTHO05D007606 7.4e-25 118.6 144 45.8
SMO351G0165 Selaginella moellendorffii HOM05D006208 ORTHO05D007606 4.8e-24 115.9 217 33.2
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 1.2e-22 111.3 100 57.0
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 2.0e-22 110.5 78 67.9
CBR_g36542 Chara braunii HOM05D006208 ORTHO05D007606 5.9e-22 109.0 221 32.1
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 7.6e-22 108.6 107 51.4
FAN08G0500 Fragaria x ananassa HOM05D006208 ORTHO05D007606 5.0e-21 105.9 95 58.9
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 6.5e-21 105.5 116 47.4
VMungo1383G2538 Vigna mungo HOM05D006208 ORTHO05D007606 9.3e-20 101.7 145 41.4
SHI14855 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-19 100.9 163 42.9
Medtr7g087170 Medicago truncatula HOM05D006208 ORTHO05D007606 3.0e-18 96.7 82 58.5
TPR.G15311 Trifolium pratense HOM05D006208 ORTHO05D007606 3.9e-18 96.3 83 56.6
AL5G15230 Arabidopsis lyrata HOM05D001124 ORTHO05D007606 6.7e-18 95.5 141 48.9
Sc22g0000880 Simmondsia chinensis HOM05D006208 ORTHO05D007606 2.2e-16 90.5 76 52.6
Peaxi162Scf00146g00108 Petunia axillaris HOM05D006208 ORTHO05D007606 2.4e-15 87.0 74 51.4
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.9e-15 85.5 85 54.1
Mapoly0047s0023 Marchantia polymorpha HOM05D006208 ORTHO05D007606 3.8e-13 79.7 213 25.8
Medtr7g087330 Medicago truncatula HOM05D006208 ORTHO05D007606 9.4e-12 75.1 99 45.5
SHI14857 Sapria himalayana HOM05D006208 ORTHO05D007606 9.4e-12 75.1 52 67.3
Aqoxy3G03625 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 2.1e-11 73.9 71 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1480 Anthoceros agrestis HOM05D006208 ORTHO05D007606 6.1e-11 72.4 145 31.0
Aqoxy3G03662 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 5.1e-10 69.3 177 29.9
Oeu054958.1 Olea europaea HOM05D006208 ORTHO05D007606 5.1e-10 69.3 79 46.8
Oeu029768.1 Olea europaea HOM05D006208 ORTHO05D007606 5.7e-09 65.9 54 46.3
SalBow5G5293 Salvia bowleyana HOM05D000001 ORTHO05D009952 1.7e-08 64.3 123 36.6
TPR.G7822 Trifolium pratense HOM05D006208 ORTHO05D007606 1.7e-08 64.3 196 31.6
C03p16190 Brassica napus HOM05D026471 ORTHO05D027980 2.8e-08 63.5 49 73.5
C03p30130 Brassica napus HOM05D026471 ORTHO05D027980 2.8e-08 63.5 49 73.5
Oeu029769.2 Olea europaea HOM05D006208 ORTHO05D007606 2.8e-08 63.5 54 44.4
SEGI_30866 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 2.8e-08 63.5 93 36.6
Pp3c18_2140 Physcomitrium patens HOM05D006208 ORTHO05D007606 1.1e-07 61.6 93 38.7
Oeu032547.1 Olea europaea HOM05D006208 ORTHO05D007606 1.5e-06 57.8 53 41.5
Pp3c18_14463 Physcomitrium patens HOM05D006208 ORTHO05D007606 3.4e-06 56.6 105 31.4


User provided reference genes

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