Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0734 Capsella rubella HOM05D007629 ORTHO05D009511 1.4e-59 233.0 143 100.0
AL1G18320 Arabidopsis lyrata HOM05D007629 ORTHO05D009511 1.0e-54 216.9 145 91.0
AT1G07985 Arabidopsis thaliana HOM05D007629 ORTHO05D009511 1.2e-53 213.4 145 90.3
Sp1g06620 Schrenkiella parvula HOM05D007629 ORTHO05D009511 1.4e-51 206.5 145 89.0
Thhalv10009537m.g Eutrema salsugineum HOM05D007629 ORTHO05D009511 5.3e-51 204.5 146 89.7
CARHR007770 Cardamine hirsuta HOM05D007629 ORTHO05D009511 1.6e-47 193.0 146 87.0
BraA06t23712Z Brassica rapa HOM05D000280 ORTHO05D000632 6.1e-47 191.0 143 85.3
BcaB02g06696 Brassica carinata HOM05D007629 ORTHO05D009511 2.6e-45 185.7 145 84.1
BraA08t35446Z Brassica rapa HOM05D000280 ORTHO05D000632 4.8e-44 181.4 141 83.7
BcaB03g13359 Brassica carinata HOM05D007629 ORTHO05D009511 3.1e-43 178.7 140 77.9
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 8.0e-39 164.1 143 77.6
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 3.0e-38 162.2 143 76.9
BcaC07g42509 Brassica carinata HOM05D007629 ORTHO05D009511 7.5e-37 157.5 141 69.5
Aa31sc522G10 Aethionema arabicum HOM05D007629 ORTHO05D009511 1.0e-33 147.1 144 61.1
A09p66070 Brassica napus HOM05D001466 ORTHO05D001452 2.9e-28 129.0 102 78.4
BraA09t41945Z Brassica rapa HOM05D001466 ORTHO05D001452 2.9e-28 129.0 102 78.4
C08p50220 Brassica napus HOM05D001466 ORTHO05D001452 1.4e-27 126.7 102 77.5
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 6.4e-20 101.3 107 58.9
BolC8t52551H Brassica oleracea HOM05D001466 ORTHO05D001452 1.9e-19 99.8 99 59.6
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 1.9e-16 89.7 106 55.7
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 2.5e-16 89.4 140 47.9
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 3.3e-16 89.0 105 53.3
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 5.6e-16 88.2 105 53.3
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 5.6e-16 88.2 113 52.2
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 5.6e-16 88.2 134 50.7
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 7.3e-16 87.8 106 55.7
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 7.3e-16 87.8 112 52.7
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 7.3e-16 87.8 112 52.7
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 1.6e-15 86.7 147 44.9
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 1.6e-15 86.7 106 55.7
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 2.1e-15 86.3 106 52.8
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 2.8e-15 85.9 115 50.4
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 4.7e-15 85.1 118 50.8
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 4.7e-15 85.1 118 50.8
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 6.2e-15 84.7 104 55.8
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 6.2e-15 84.7 118 50.0
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 6.2e-15 84.7 103 54.4
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 8.1e-15 84.3 102 57.8
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.8e-14 83.2 103 53.4
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 1.8e-14 83.2 104 52.9
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 1.8e-14 83.2 102 53.9
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 1.8e-14 83.2 103 56.3
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 1.8e-14 83.2 103 53.4
QL04p006494 Quercus lobata HOM05D007629 ORTHO05D009511 2.3e-14 82.8 133 58.6
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 2.3e-14 82.8 103 52.4
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 3.1e-14 82.4 135 45.2
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 5.2e-14 81.6 129 54.3
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 5.2e-14 81.6 105 51.4
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 6.8e-14 81.3 113 50.4
Potri.001G266500 Populus trichocarpa HOM05D007629 ORTHO05D009511 8.9e-14 80.9 134 46.3
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 1.2e-13 80.5 104 52.9
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 1.5e-13 80.1 149 41.6
MBI01_g26744_MAGBIO Magnolia biondii HOM05D007629 ORTHO05D009511 1.5e-13 80.1 104 53.8
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 1.5e-13 80.1 101 49.5
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 2.0e-13 79.7 129 51.9
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 3.4e-13 79.0 107 49.5
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 3.4e-13 79.0 132 47.0
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 3.4e-13 79.0 103 51.5
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 7.5e-13 77.8 99 51.5
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 9.9e-13 77.4 102 51.0
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 1.7e-12 76.6 103 51.5
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 1.7e-12 76.6 154 38.3
Haze_03204 Corylus avellana HOM05D007629 ORTHO05D009511 1.7e-12 76.6 102 52.9
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 1.7e-12 76.6 107 48.6
VMungo1127G0677 Vigna mungo HOM05D007629 ORTHO05D009511 2.2e-12 76.3 93 52.7
Medtr8g037205 Medicago truncatula HOM05D007629 ORTHO05D009511 1.1e-11 73.9 127 44.9
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 1.1e-11 73.9 111 44.1
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 1.4e-11 73.6 155 40.0
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 1.4e-11 73.6 112 47.3
TWI53G0918 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 1.4e-11 73.6 97 53.6
Lj3g0012705 Lotus japonicus HOM05D007629 ORTHO05D009511 2.4e-11 72.8 90 54.4
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 2.4e-11 72.8 127 43.3
Cpa.g.c29394.2 Carica papaya HOM05D007629 ORTHO05D009511 5.4e-11 71.6 97 51.5
Glyma.12G237100 Glycine max HOM05D007629 ORTHO05D009511 5.4e-11 71.6 102 50.0
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 7.1e-11 71.2 104 48.1
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 9.2e-11 70.9 138 39.9
TPR.G1849 Trifolium pratense HOM05D007629 ORTHO05D009511 1.2e-10 70.5 131 42.7
Sed0017474 Sechium edule HOM05D007629 ORTHO05D009511 1.6e-10 70.1 91 53.8
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 2.7e-10 69.3 117 44.4
Sc11g0009160 Simmondsia chinensis HOM05D007629 ORTHO05D009511 2.7e-10 69.3 104 50.0
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 1.3e-09 67.0 103 48.5
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 3.9e-09 65.5 97 51.5
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 6.6e-09 64.7 140 35.7
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 1.1e-08 63.9 102 45.1
TWI53G0001 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 2.5e-08 62.8 104 46.2
ATR0332G023 Amborella trichopoda HOM05D007629 ORTHO05D009511 9.5e-08 60.8 131 37.4
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 1.2e-07 60.5 117 41.0
CDE05G3301 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.6e-07 60.1 98 44.9
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 3.6e-07 58.9 133 36.8
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 8.1e-07 57.8 133 36.1
CDE10G1066 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 1.4e-06 57.0 118 44.1
CDE10G0639 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 2.4e-06 56.2 97 45.4
AUR62023067 Chenopodium quinoa HOM05D007629 ORTHO05D009511 4.0e-06 55.5 138 42.8


User provided reference genes

Program Settings