Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 6.4e-106 387.5 207 100.0
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 1.8e-87 326.2 208 84.6
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 3.6e-80 302.0 208 82.2
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 5.5e-73 278.1 214 77.6
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 1.5e-70 270.0 208 75.0
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 3.7e-69 265.4 214 75.2
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 1.2e-67 260.4 209 73.2
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 1.6e-67 260.0 208 72.1
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 5.9e-67 258.1 209 72.7
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 5.9e-67 258.1 209 72.7
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 5.3e-60 235.0 211 66.4
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 7.0e-60 234.6 211 66.4
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 3.6e-56 222.2 209 65.6
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 6.1e-56 221.5 209 65.6
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 9.8e-54 214.2 209 61.2
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 2.8e-53 212.6 209 63.6
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 5.0e-50 201.8 210 61.4
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 1.6e-48 196.8 108 90.7
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 3.3e-41 172.6 171 60.2
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 1.0e-26 124.4 102 61.8
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 6.6e-26 121.7 103 59.2
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 8.6e-26 121.3 111 55.9
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 2.8e-24 116.3 103 54.4
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 6.2e-24 115.2 104 54.8
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 6.2e-24 115.2 203 41.9
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 8.1e-24 114.8 103 54.4
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 8.1e-24 114.8 144 44.4
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 1.8e-23 113.6 101 56.4
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.8e-23 113.6 101 56.4
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.8e-23 113.6 103 53.4
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.2e-23 112.1 101 55.4
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 5.2e-23 112.1 101 56.4
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 6.8e-23 111.7 78 76.9
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 2.0e-22 110.2 91 60.4
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 9.9e-22 107.8 156 42.9
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.3e-21 107.5 124 50.0
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 3.7e-21 105.9 94 57.4
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 4.9e-21 105.5 127 48.0
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 4.9e-21 105.5 95 56.8
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 8.3e-21 104.8 112 49.1
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 1.4e-20 104.0 224 38.8
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.4e-20 104.0 91 53.8
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 1.4e-20 104.0 113 48.7
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.4e-20 103.2 195 39.5
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 2.4e-20 103.2 88 56.8
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 2.4e-20 103.2 154 40.9
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 4.1e-20 102.4 105 54.3
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 5.4e-20 102.1 95 50.5
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 7.1e-20 101.7 96 49.0
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 1.2e-19 100.9 154 41.6
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 1.6e-19 100.5 94 53.2
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 1.6e-19 100.5 108 49.1
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 1.6e-19 100.5 95 50.5
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 2.1e-19 100.1 102 49.0
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 2.7e-19 99.8 89 53.9
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 3.5e-19 99.4 209 36.4
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 4.6e-19 99.0 89 53.9
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 1.3e-18 97.4 117 43.6
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.3e-18 97.4 90 48.9
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 1.7e-18 97.1 199 38.2
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.7e-18 97.1 94 46.8
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 1.7e-18 97.1 94 46.8
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 1.7e-18 97.1 93 52.7
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 2.3e-18 96.7 114 45.6
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 3.0e-18 96.3 204 37.3
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 3.9e-18 95.9 94 46.8
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 5.1e-18 95.5 94 50.0
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 8.6e-18 94.7 201 36.3
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.1e-17 94.4 146 41.8
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 1.1e-17 94.4 112 47.3
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 1.9e-17 93.6 95 45.3
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 9.5e-17 91.3 86 55.8
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 1.2e-16 90.9 140 37.9
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 1.6e-16 90.5 87 48.3
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 4.7e-16 89.0 153 36.6
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 6.2e-16 88.6 159 39.6
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 8.1e-16 88.2 122 42.6
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 1.1e-15 87.8 110 42.7
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 1.4e-15 87.4 153 37.9
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.4e-15 87.4 93 47.3
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 4.0e-15 85.9 88 51.1
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 6.8e-15 85.1 157 34.4
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 2.2e-13 80.1 206 31.1
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 6.4e-13 78.6 132 37.9
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.4e-12 77.4 106 40.6
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 2.4e-12 76.6 126 42.9
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 2.4e-12 76.6 130 34.6
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 3.2e-12 76.3 140 38.6
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 3.2e-12 76.3 158 34.2
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 4.2e-12 75.9 165 32.1
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 4.2e-12 75.9 173 34.7
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 9.2e-12 74.7 172 33.1
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 1.6e-11 73.9 188 30.3
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 2.1e-11 73.6 171 35.7
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 2.7e-11 73.2 82 43.9
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 2.7e-11 73.2 65 50.8
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 3.5e-11 72.8 85 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 7.8e-11 71.6 146 30.8
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 1.3e-10 70.9 119 38.7
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 2.3e-10 70.1 116 37.1
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 4.3e-09 65.9 67 49.3
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 4.3e-09 65.9 153 31.4
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 7.3e-09 65.1 79 32.9
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 7.3e-09 65.1 65 43.1
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 1.6e-08 63.9 72 43.1
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 1.8e-07 60.5 175 26.9
AL8G24720 Arabidopsis lyrata HOM05D000789 ORTHO05D038648 1.2e-06 57.8 90 31.1
MSTRG.10012 Avicennia marina HOM05D000789 ORTHO05D000897 1.2e-06 57.8 114 32.5
Phvul.006G152400 Phaseolus vulgaris HOM05D000789 ORTHO05D000897 2.0e-06 57.0 83 34.9
PGSC0003DMG400003357 Solanum tuberosum HOM05D000789 ORTHO05D000897 2.0e-06 57.0 114 28.9
TPR.G33162 Trifolium pratense HOM05D000789 ORTHO05D000897 2.0e-06 57.0 115 30.4
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 2.0e-06 57.0 100 29.0
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 2.6e-06 56.6 92 30.4
VMungo0540G0387 Vigna mungo HOM05D000789 ORTHO05D000897 2.6e-06 56.6 83 32.5
Ah.13g074110 Amaranthus hybridus HOM05D000789 ORTHO05D000897 3.4e-06 56.2 95 31.6
Migut.G00300 Erythranthe guttata HOM05D000789 ORTHO05D000897 3.4e-06 56.2 114 31.6
TPR.G33210 Trifolium pratense HOM05D000789 ORTHO05D000897 3.4e-06 56.2 144 29.9
MSTRG.4000 Avicennia marina HOM05D000789 ORTHO05D000897 4.4e-06 55.8 114 31.6
DCAR_017167 Daucus carota HOM05D000789 ORTHO05D000897 4.4e-06 55.8 113 28.3
TPR.G9941 Trifolium pratense HOM05D000789 ORTHO05D000897 4.4e-06 55.8 85 32.9
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 5.8e-06 55.5 82 30.5
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 5.8e-06 55.5 92 29.3
Oeu029306.3 Olea europaea HOM05D000789 ORTHO05D000897 5.8e-06 55.5 101 32.7
Sabra13G0026200 Salix brachista HOM05D000789 ORTHO05D000897 5.8e-06 55.5 113 26.5
CSS0050300 Camellia sinensis var. sinensis HOM05D000789 ORTHO05D000897 7.6e-06 55.1 113 26.5
Thhalv10015323m.g Eutrema salsugineum HOM05D000789 ORTHO05D000897 7.6e-06 55.1 85 32.9
Lj6g0010334 Lotus japonicus HOM05D000789 ORTHO05D000897 7.6e-06 55.1 76 34.2
Mapoly0005s0152 Marchantia polymorpha HOM05D000789 ORTHO05D000897 7.6e-06 55.1 95 31.6
Sopen03g030560 Solanum pennellii HOM05D000002 ORTHO05D002065 7.6e-06 55.1 100 30.0
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 7.6e-06 55.1 92 29.3
Hma1.2p1_1362F.1_g278250 Hydrangea macrophylla HOM05D000789 ORTHO05D000897 9.9e-06 54.7 113 26.5
Solyc03g111450.3 Solanum lycopersicum HOM05D000789 ORTHO05D002065 9.9e-06 54.7 100 30.0
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 9.9e-06 54.7 136 28.7


User provided reference genes

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