Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.5e-206 722.6 371 100.0
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.4e-189 663.7 372 93.0
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.3e-186 655.6 372 91.1
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-182 642.5 372 89.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.3e-165 586.6 373 81.5
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-164 583.6 373 83.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-164 582.4 379 84.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.1e-163 579.3 374 83.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.6e-161 571.2 376 78.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-161 570.9 372 81.7
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 7.4e-161 570.9 372 81.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-149 530.8 342 82.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 4.8e-136 488.4 385 68.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.1e-135 487.3 386 66.6
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.4e-134 482.3 298 78.9
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.3e-133 480.3 383 65.0
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.7e-133 479.9 315 74.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.2e-133 479.6 400 64.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.8e-133 478.8 354 70.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.8e-133 478.8 374 67.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.2e-132 475.3 301 76.4
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.2e-131 473.8 315 74.3
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.6e-131 473.4 354 67.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 2.7e-131 472.6 329 70.2
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 3.6e-131 472.2 392 64.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.4e-130 470.3 345 68.7
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.4e-130 470.3 334 71.9
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.3e-130 469.5 360 67.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 5.1e-130 468.4 315 73.7
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 5.1e-130 468.4 376 65.2
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 6.7e-130 468.0 338 69.8
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 6.7e-130 468.0 350 66.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.1e-129 467.2 362 67.4
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.5e-129 466.8 377 64.7
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.5e-129 466.8 333 70.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.0e-129 466.5 309 73.5
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.6e-129 466.1 347 68.9
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.6e-129 466.1 300 74.3
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.4e-129 465.3 298 75.5
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 9.7e-129 464.2 302 74.2
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 9.7e-129 464.2 382 65.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.3e-128 463.8 350 68.9
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.7e-128 463.4 313 72.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.2e-128 463.0 378 64.0
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.7e-128 462.2 377 65.0
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.1e-127 460.7 321 71.3
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.1e-127 460.7 304 74.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.4e-127 459.5 306 72.9
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.1e-127 459.1 362 64.4
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 7.0e-127 458.0 290 75.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 7.0e-127 458.0 309 71.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.9e-126 454.9 306 72.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 7.7e-126 454.5 372 65.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-125 453.8 301 74.1
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.2e-125 453.0 317 69.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.2e-125 453.0 311 71.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.9e-125 452.6 355 65.9
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.9e-125 452.6 350 67.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.9e-125 452.6 372 63.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 5.0e-125 451.8 337 68.8
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.2e-124 449.1 382 63.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 3.2e-124 449.1 330 67.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.1e-123 446.4 301 72.4
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 4.7e-123 445.3 318 68.9
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 8.0e-123 444.5 375 62.4
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 8.0e-123 444.5 307 68.1
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 8.0e-123 444.5 319 66.8
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.0e-122 444.1 380 63.9
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.2e-122 441.8 379 62.8
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.1e-121 440.7 382 62.0
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.7e-121 438.3 379 61.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.2e-120 436.4 318 67.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.8e-120 436.0 372 62.9
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 4.8e-120 435.3 301 71.4
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 6.3e-120 434.9 360 63.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.1e-119 432.6 376 60.9
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.2e-118 430.6 328 68.0
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.6e-118 430.3 367 63.2
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.7e-118 429.5 370 61.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-117 426.8 365 61.6
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.2e-117 426.4 369 61.8
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.5e-116 422.9 445 53.7
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.2e-116 422.5 346 63.6
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.4e-114 417.2 310 67.4
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.4e-114 417.2 348 61.2
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 2.2e-112 409.8 349 60.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.7e-112 409.1 372 56.2
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 6.3e-112 408.3 343 59.5
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 9.1e-111 404.4 358 59.2
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.6e-110 403.7 359 57.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 9.4e-108 394.4 382 57.9
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.0e-105 386.7 252 73.8
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.4e-103 378.6 274 66.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.4e-103 378.6 274 66.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.3e-100 369.4 382 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 3.0e-98 362.8 284 62.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.7e-96 357.1 293 59.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.2e-94 350.9 290 64.5
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.2e-94 350.9 310 55.8
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.2e-91 340.9 291 60.1
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 4.7e-91 339.0 290 54.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-90 335.9 290 54.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-90 335.9 306 53.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 5.2e-90 335.5 306 53.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-89 334.0 290 54.1
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.4e-89 332.8 303 53.1
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 7.5e-89 331.6 292 62.7
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.8e-89 331.3 298 55.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.9e-88 329.7 245 68.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 8.3e-88 328.2 299 53.5
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.3e-88 328.2 307 52.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-87 326.2 291 53.3
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.2e-87 326.2 299 52.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.2e-87 324.7 299 54.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-86 324.3 299 52.8
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.0e-86 323.6 303 52.5
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-85 321.2 299 52.5
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-85 320.5 272 55.5
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.0e-85 319.7 291 52.2
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.0e-85 319.7 305 53.1
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.6e-85 318.5 297 52.5
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-84 317.8 299 52.8
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 7.3e-84 315.1 215 72.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-83 314.3 293 53.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.6e-83 313.9 290 52.1
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.6e-83 313.9 290 51.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.1e-83 313.5 291 52.6
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-82 311.2 311 50.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-82 310.5 306 51.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-82 310.5 306 51.3
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.3e-82 310.1 303 49.2
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.3e-82 310.1 301 52.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.0e-82 309.3 303 50.5
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.0e-82 309.3 310 50.3
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 8.9e-82 308.1 306 50.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-80 304.3 293 52.9
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-80 303.5 293 52.6
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 6.4e-80 302.0 303 49.2
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.6e-78 295.8 250 68.4
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 4.6e-78 295.8 306 49.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.3e-77 293.5 308 47.4
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.3e-76 288.5 271 50.9
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-75 287.7 280 49.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-71 274.2 292 50.3
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 7.1e-71 271.9 278 50.7
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-70 269.6 271 51.3
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 4.6e-70 269.2 194 68.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-67 259.6 353 39.9
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.4e-65 253.1 275 52.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.4e-63 246.9 244 50.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 7.6e-57 225.3 261 47.1
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.9e-56 222.6 219 52.5
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-54 217.6 189 54.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-54 217.6 189 54.5
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 5.3e-50 202.6 322 38.8
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.9e-48 196.8 200 54.0
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.9e-38 162.2 148 52.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-37 161.8 128 56.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-36 157.1 128 55.5
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-36 157.1 128 55.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.5e-32 142.1 305 31.1
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.0e-29 135.2 83 75.9
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-29 134.0 163 46.6
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-29 134.0 108 53.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.7e-24 117.9 510 25.3
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.6e-22 110.2 105 59.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-18 95.9 81 64.2


User provided reference genes

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