Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1716.4 909 100.0
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1594.7 915 92.6
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1583.2 915 92.0
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1553.1 915 90.3
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1543.1 915 90.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1537.3 915 89.4
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1533.5 921 89.1
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1531.9 918 88.9
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1525.4 921 88.5
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1481.1 916 86.4
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1474.5 907 87.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1463.4 915 86.7
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1454.1 936 84.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1395.6 916 83.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1384.4 934 81.5
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1344.3 913 79.3
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1153.7 917 67.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1151.7 916 66.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1151.7 917 67.7
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1144.0 918 65.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 917 67.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1138.6 917 66.8
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1136.3 919 64.2
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1132.1 917 66.5
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 917 66.4
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 922 63.9
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1122.5 992 60.8
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1119.0 912 63.9
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1116.3 955 63.1
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1115.9 904 66.9
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1114.8 912 65.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1110.9 913 65.5
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1108.2 916 65.4
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1105.9 918 65.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1105.9 920 64.8
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1105.1 918 63.9
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 920 65.2
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1099.3 917 63.6
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 920 62.8
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1096.3 914 64.3
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 911 62.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1092.0 916 64.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 916 63.0
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1090.5 908 63.3
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1081.2 917 62.4
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1078.2 928 62.3
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.5e-311 1072.0 931 61.4
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 1.2e-310 1069.7 921 59.9
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 8.0e-310 1067.0 851 65.7
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.8e-309 1065.8 929 60.9
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 2.6e-308 1062.0 940 62.4
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.7e-308 1060.8 931 61.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 9.8e-308 1060.1 916 60.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.2e-307 1058.9 910 61.6
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 4.1e-306 1054.7 923 59.9
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.0e-304 1050.0 926 61.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 5.0e-304 1047.7 920 58.8
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.5e-303 1046.2 910 59.5
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.1e-301 1040.0 923 60.5
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 2.0e-300 1035.8 874 62.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.6e-297 1026.2 906 59.6
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 7.8e-297 1023.8 905 59.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 3.3e-295 1018.5 1074 54.4
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 962 56.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.1e-290 1003.4 866 60.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.9e-290 1002.7 913 59.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.1e-290 1001.5 1084 52.5
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.0e-288 996.9 871 59.8
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 8.1e-286 987.3 991 56.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 3.1e-285 985.3 910 58.0
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 4.0e-285 984.9 587 91.1
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 9.9e-284 980.3 899 58.7
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.0e-280 970.3 920 56.3
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 6.4e-275 951.0 915 55.3
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.9e-274 949.5 911 58.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.9e-267 924.9 907 56.1
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.4e-267 924.1 771 63.2
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.3e-263 911.8 876 55.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.1e-261 907.1 761 62.7
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.5e-260 903.3 920 53.3
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 9.9e-260 900.6 928 55.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 9.9e-260 900.6 863 55.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.4e-258 896.7 1016 50.7
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.4e-253 879.4 922 53.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.4e-252 875.5 906 53.9
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.0e-244 849.7 711 63.4
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 4.2e-242 842.0 949 48.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 3.0e-240 835.9 635 72.1
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.0e-240 835.9 730 64.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.3e-238 830.5 1140 43.3
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.9e-234 816.6 928 50.3
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 9.1e-229 797.7 727 57.8
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.2e-227 793.1 911 49.2
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 3.6e-225 785.8 778 54.8
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.1e-221 774.2 667 61.2
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.4e-216 757.3 439 93.2
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.0e-208 729.2 601 62.9
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 4.4e-183 646.0 529 63.3
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.7e-174 617.5 573 56.7
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 3.6e-161 573.2 422 68.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.3e-155 553.9 487 60.8
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-153 547.0 508 59.6
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 1.9e-149 534.3 896 38.5
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 1.1e-141 508.4 894 41.9
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.9e-136 489.2 465 57.4
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.3e-126 458.4 899 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 3.6e-124 450.3 918 33.9
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 3.0e-123 447.2 413 59.3
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 3.0e-123 447.2 605 44.0
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 8.5e-118 429.1 923 34.0
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.6e-111 407.5 300 72.3
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 4.2e-101 373.6 636 38.8
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.5e-93 348.6 668 38.0
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-86 324.7 567 38.3
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.3e-85 320.9 351 51.0
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 9.8e-82 309.3 235 71.5
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.0e-75 289.3 236 64.0
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.4e-75 288.9 266 56.8
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.1e-69 269.2 284 54.6
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 5.2e-67 260.4 211 73.5
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.2e-65 255.0 473 40.6
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.3e-57 229.2 151 71.5
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 9.6e-53 213.0 118 94.1
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.9e-40 172.2 147 61.2
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 2.5e-37 161.8 120 65.8
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 3.6e-36 157.9 263 41.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.4e-32 146.0 98 74.5
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.9e-30 137.9 227 37.9
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.3e-27 127.5 145 44.8
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.7e-21 107.5 143 46.9
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 9.0e-19 100.1 120 47.5
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.6e-18 98.6 105 49.5
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 5.5e-16 90.9 82 63.4
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 9.3e-16 90.1 77 57.1
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 3.5e-15 88.2 156 35.3
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 1.8e-14 85.9 58 63.8
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.9e-14 84.7 100 53.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.4e-11 75.5 132 34.8
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.7e-09 69.3 65 53.8
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.5e-09 67.4 69 46.4
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.5e-09 67.0 113 36.3
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.5e-08 64.3 151 31.1
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.1e-07 62.4 180 31.1
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.6e-07 61.2 75 53.3
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 7.9e-07 60.5 178 33.1
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.0e-06 60.1 178 33.7
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 3.0e-06 58.5 103 35.0
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 6.7e-06 57.4 105 42.9


User provided reference genes

Program Settings