Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.4e-249 865.9 457 100.0
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 5.3e-201 704.5 465 85.6
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 4.9e-199 698.0 464 85.1
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 5.3e-185 651.4 467 78.4
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.9e-175 619.0 473 76.5
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 5.1e-172 608.2 467 76.9
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.4e-148 530.4 467 68.3
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 4.0e-148 528.9 469 67.8
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 2.0e-147 526.6 467 67.9
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 5.7e-147 525.0 469 67.8
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 4.8e-138 495.4 472 64.4
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 2.5e-134 483.0 466 63.7
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.8e-117 426.4 484 57.4
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.5e-115 420.6 478 58.4
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 2.2e-114 416.8 499 56.3
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 7.8e-112 408.3 471 58.2
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 7.8e-112 408.3 492 55.9
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.0e-111 407.9 491 56.8
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 8.3e-106 388.3 477 56.2
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 7.1e-105 385.2 471 56.5
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 7.1e-105 385.2 471 56.3
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 1.2e-104 384.4 507 53.6
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 5.8e-99 365.5 474 53.8
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.5e-96 356.3 454 54.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.3e-90 337.8 425 54.8
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-87 326.6 452 50.4
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 8.1e-85 318.5 465 49.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 2.4e-84 317.0 453 49.9
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 2.0e-83 313.9 452 49.1
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 3.4e-83 313.2 460 48.9
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 9.9e-83 311.6 490 46.9
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 2.9e-82 310.1 456 48.9
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-81 308.1 479 47.6
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.2e-32 145.2 531 31.6
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 3.2e-25 120.6 497 29.4
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 7.2e-25 119.4 408 29.9
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 1.4e-23 115.2 400 30.2
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.4e-23 115.2 515 28.2
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 1.8e-23 114.8 298 31.2
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 5.9e-19 99.8 377 28.4
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.0e-18 99.0 399 28.8
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.5e-17 94.4 463 27.6
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 9.5e-17 92.4 466 27.3
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 1.2e-16 92.0 413 30.8
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.8e-16 90.9 221 31.2
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 1.0e-15 89.0 399 27.8
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 2.3e-15 87.8 428 26.6
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 6.8e-15 86.3 394 28.2
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.0e-14 84.7 439 25.3
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.0e-14 84.7 333 29.1
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 7.5e-14 82.8 485 26.0
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 7.5e-14 82.8 205 34.6
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 2.8e-13 80.9 293 31.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 2.3e-10 71.2 582 25.1
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 5.6e-09 66.6 131 39.7
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 1.8e-07 61.6 451 25.5
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 4.0e-07 60.5 208 30.3
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.2e-06 58.9 468 25.0
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 3.4e-06 57.4 222 26.1
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 4.4e-06 57.0 190 27.4


User provided reference genes

Program Settings