Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 5.9e-96 354.4 201 100.0
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.0e-92 343.6 189 96.8
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.5e-86 322.4 190 86.8
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 5.5e-86 321.2 189 90.5
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 7.0e-81 304.3 189 87.8
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 2.0e-80 302.8 191 86.4
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.6e-80 302.4 192 85.9
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.0e-79 300.4 192 85.4
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.0e-79 300.4 195 84.1
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 6.5e-71 271.2 189 76.2
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 6.5e-71 271.2 189 76.2
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 3.2e-70 268.9 189 75.7
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.6e-59 232.6 126 98.4
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.4e-57 226.9 155 70.3
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 1.4e-57 226.9 155 69.7
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.8e-57 226.5 155 69.7
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.4e-57 226.1 155 69.7
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.6e-56 223.4 155 69.0
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 7.8e-56 221.1 194 59.3
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 5.0e-55 218.4 205 64.9
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 6.6e-55 218.0 154 67.5
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 8.6e-55 217.6 193 62.2
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.5e-54 216.1 155 67.7
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 4.3e-54 215.3 155 69.7
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.2e-53 213.8 187 62.6
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 2.8e-53 212.6 187 57.8
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 2.8e-53 212.6 155 67.1
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.0e-52 210.7 139 69.8
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.0e-52 210.7 155 63.9
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 2.3e-52 209.5 155 63.2
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 3.1e-52 209.1 190 61.1
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 3.1e-52 209.1 181 56.4
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 4.0e-52 208.8 187 56.7
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 8.9e-52 207.6 187 61.5
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.7e-50 203.4 187 56.1
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.7e-50 203.4 187 57.2
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.2e-50 203.0 175 60.6
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 3.7e-50 202.2 187 57.8
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 8.3e-50 201.1 177 65.0
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 3.2e-49 199.1 170 58.2
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.2e-49 199.1 152 64.5
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.4e-49 198.4 170 58.2
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 9.2e-49 197.6 189 56.6
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-48 197.2 177 62.1
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.2e-48 197.2 185 56.8
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 2.7e-48 196.1 180 53.3
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 7.8e-48 194.5 183 54.1
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.0e-47 194.1 187 55.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 1.3e-47 193.7 155 60.0
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.7e-47 193.4 152 62.5
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.3e-47 193.0 187 55.6
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 2.3e-47 193.0 152 61.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.3e-47 193.0 189 56.1
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 5.0e-47 191.8 189 55.6
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 8.6e-47 191.0 189 53.4
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.5e-46 190.3 156 60.3
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 3.3e-46 189.1 188 52.1
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 5.6e-46 188.3 152 61.2
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 5.6e-46 188.3 191 52.9
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 9.5e-46 187.6 176 54.0
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.2e-45 187.2 194 57.2
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.6e-45 186.8 173 56.6
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.4e-44 183.7 152 59.9
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 3.1e-44 182.6 152 59.2
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 4.0e-44 182.2 173 53.2
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 4.0e-44 182.2 158 58.9
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 5.2e-44 181.8 155 60.6
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 5.2e-44 181.8 137 62.8
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.2e-43 180.6 192 49.5
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.2e-43 180.6 179 57.5
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 2.0e-43 179.9 175 52.0
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 2.6e-43 179.5 139 61.9
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.4e-43 179.1 192 50.0
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 3.4e-43 179.1 149 56.4
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 9.8e-43 177.6 175 52.6
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.3e-42 177.2 149 57.7
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 2.2e-42 176.4 192 49.0
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 3.7e-42 175.6 185 50.3
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 3.7e-42 175.6 170 54.1
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 4.9e-42 175.3 186 48.9
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.9e-42 175.3 189 50.8
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.4e-42 174.9 192 48.4
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.4e-42 174.9 192 48.4
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.9e-41 173.3 192 49.0
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.1e-41 172.2 192 49.0
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.6e-40 170.2 193 50.3
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.7e-39 166.8 176 48.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.5e-38 163.7 187 48.1
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-37 159.8 189 45.5
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 4.7e-37 158.7 151 53.0
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 4.7e-37 158.7 150 58.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.7e-34 150.2 145 51.7
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 4.9e-34 148.7 147 50.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 8.3e-34 147.9 123 59.3
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 3.5e-32 142.5 124 58.9
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 4.6e-32 142.1 122 58.2
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 4.6e-32 142.1 124 58.9
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.5e-30 137.1 122 57.4
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 6.8e-28 128.3 185 42.7
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 7.6e-27 124.8 110 54.5
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.9e-25 120.2 125 47.2
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-24 117.5 97 59.8
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 3.9e-23 112.5 101 57.4
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-22 110.5 102 56.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.5e-22 110.5 96 50.0
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 4.3e-22 109.0 83 65.1
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 4.7e-21 105.5 72 66.7
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.1e-20 102.8 125 39.2
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-19 100.5 92 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 5.8e-19 98.6 123 40.7
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 3.8e-18 95.9 116 43.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-17 93.6 87 55.2
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 4.2e-17 92.4 80 58.8
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.7e-16 89.7 92 50.0
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.5e-16 89.4 116 39.7
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.5e-16 89.4 116 39.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 8.7e-15 84.7 112 45.5
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.1e-14 84.3 109 40.4
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 5.6e-14 82.0 62 66.1
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 8.1e-13 78.2 61 65.6
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.1e-12 77.8 159 39.0
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.2e-09 65.9 67 49.3
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-08 63.9 68 44.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-08 63.5 63 47.6
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 2.7e-08 63.2 41 68.3
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 4.6e-08 62.4 68 42.6
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 4.6e-08 62.4 97 38.1
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-06 57.4 63 44.4


User provided reference genes

Program Settings