Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_31297_v3 Cicer arietinum L. HOM05D003004 ORTHO05D028858 7.0e-43 176.8 84 100.0
MCO02G216 Micromonas commoda HOM05D003004 ORTHO05D028858 1.6e-23 112.5 80 62.5
Nn3g21011 Nelumbo nucifera HOM05D003004 ORTHO05D003860 2.9e-20 101.7 78 60.3
MD17G1142900 Malus domestica HOM05D003004 ORTHO05D003860 4.9e-20 100.9 78 59.0
Prupe.3G169400 Prunus persica HOM05D003004 ORTHO05D003860 4.9e-20 100.9 78 59.0
MSTRG.14300 Avicennia marina HOM05D003004 ORTHO05D003860 6.4e-20 100.5 80 60.0
MBI07_g00476_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 6.4e-20 100.5 74 63.5
Oeu026478.3 Olea europaea HOM05D003004 ORTHO05D003860 6.4e-20 100.5 80 58.8
Os02g0232400 Oryza sativa ssp. japonica HOM05D003004 ORTHO05D003860 8.3e-20 100.1 74 60.8
QL08p043421 Quercus lobata HOM05D003004 ORTHO05D003860 1.1e-19 99.8 78 59.0
VMungo0647G1404 Vigna mungo HOM05D003004 ORTHO05D003860 1.1e-19 99.8 79 57.0
Haze_26743 Corylus avellana HOM05D003004 ORTHO05D028858 1.4e-19 99.4 59 74.6
MD09G1156400 Malus domestica HOM05D003004 ORTHO05D003860 1.4e-19 99.4 78 57.7
vmacro12432 Vaccinium macrocarpon HOM05D003004 ORTHO05D003860 1.4e-19 99.4 74 62.2
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea HOM05D003004 ORTHO05D003860 1.9e-19 99.0 81 55.6
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05D003004 ORTHO05D003860 2.4e-19 98.6 80 57.5
CiPaw.03G195600 Carya illinoinensis HOM05D003004 ORTHO05D003860 2.4e-19 98.6 74 59.5
CBR_g4482 Chara braunii HOM05D003004 ORTHO05D003860 2.4e-19 98.6 78 60.3
Lj1A586T32 Lonicera japonica HOM05D003004 ORTHO05D003860 2.4e-19 98.6 78 59.0
Solyc07g055840.3 Solanum lycopersicum HOM05D003004 ORTHO05D003860 2.4e-19 98.6 74 62.2
Sopen07g029210 Solanum pennellii HOM05D003004 ORTHO05D003860 2.4e-19 98.6 74 62.2
PGSC0003DMG400017338 Solanum tuberosum HOM05D003004 ORTHO05D003860 2.4e-19 98.6 74 62.2
Zm00001eb239300 Zea mays HOM05D003004 ORTHO05D003860 3.2e-19 98.2 74 59.5
Aa31LG1G24550 Aethionema arabicum HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
AL4G41400 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
AT2G42790 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
MSTRG.6769 Avicennia marina HOM05D003004 ORTHO05D003860 4.1e-19 97.8 75 60.0
A05p03250 Brassica napus HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
A05p03320 Brassica napus HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
C04p03890 Brassica napus HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
BolC4t22025H Brassica oleracea HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
BraA05t19314Z Brassica rapa HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
BraA09t41560Z Brassica rapa HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
Carub.0004s2523 Capsella rubella HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
CAN.G1481.12 Capsicum annuum HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 62.2
CARHR137870 Cardamine hirsuta HOM05D003004 ORTHO05D003860 4.1e-19 97.8 81 56.8
Thhalv10016536m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
MBI06_g08524_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
Peaxi162Scf00154g00814 Petunia axillaris HOM05D003004 ORTHO05D003860 4.1e-19 97.8 78 59.0
Peaxi162Scf00807g00038 Petunia axillaris HOM05D003004 ORTHO05D003860 4.1e-19 97.8 78 59.0
THA.LOC104802267 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
THA.LOC104803095 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 4.1e-19 97.8 74 60.8
CAN.G486.13 Capsicum annuum HOM05D003004 ORTHO05D003860 5.4e-19 97.4 78 59.0
CDE10G1091 Ceratophyllum demersum HOM05D003004 ORTHO05D003860 5.4e-19 97.4 74 59.5
DCAR_009790 Daucus carota HOM05D003004 ORTHO05D003860 5.4e-19 97.4 74 60.8
Duzib147G1628 Durio zibethinus HOM05D003004 ORTHO05D003860 5.4e-19 97.4 74 59.5
Medtr5g091930 Medicago truncatula HOM05D003004 ORTHO05D003860 5.4e-19 97.4 79 55.7
Hund00825 Selenicereus undatus HOM05D003004 ORTHO05D003860 5.4e-19 97.4 74 59.5
Sopen12g006360 Solanum pennellii HOM05D003004 ORTHO05D003860 5.4e-19 97.4 78 59.0
PGSC0003DMG400007797 Solanum tuberosum HOM05D003004 ORTHO05D003860 5.4e-19 97.4 78 59.0
SGA_v2.0_scaffold538G52785 Striga asiatica HOM05D003004 ORTHO05D003860 5.4e-19 97.4 76 59.2
Atru.chr6.3557 Acer truncatum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 57.7
Actinidia11186 Actinidia chinensis HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Aqoxy1G01921 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 57.7
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 56.4
CSS0027416 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
CSS0034735 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Ciclev10014944m.g Citrus clementina HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 57.7
Cc05_g09160 Coffea canephora HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Dinv12715 Davidia involucrata HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 59.5
Dinv26515 Davidia involucrata HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
ECA233G2966 Erigeron canadensis HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
Migut.M00216 Erythranthe guttata HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Thhalv10005906m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
HanXRQChr12g0367491 Helianthus annuus HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
Lsat_1_v5_gn_8_31881 Lactuca sativa HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
Manes.01G129000 Manihot esculenta HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 56.4
Nitab4.5_0005521g0030 Nicotiana tabacum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
Nitab4.5_0010286g0010 Nicotiana tabacum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
Oeu006149.1 Olea europaea HOM05D003004 ORTHO05D003860 7.1e-19 97.1 80 57.5
PSO528G0280 Papaver somniferum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Psat0s4248g0040 Pisum sativum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 55.1
Potri.014G141900 Populus trichocarpa HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 57.7
SalBow7G4649 Salvia bowleyana HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Sp5g04090 Schrenkiella parvula HOM05D003004 ORTHO05D003860 7.1e-19 97.1 74 60.8
Solyc12g011000.2 Solanum lycopersicum HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 59.0
TAR627G0638 Trochodendron aralioides HOM05D003004 ORTHO05D003860 7.1e-19 97.1 78 57.7
unitig_746.g26658 Utricularia gibba HOM05D003004 ORTHO05D003860 7.1e-19 97.1 76 57.9
EL10Ac9g21023 Beta vulgaris HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
BcaB02g07501 Brassica carinata HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
BcaC07g40224 Brassica carinata HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
A07p24330 Brassica napus HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
A09p51310 Brassica napus HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
C06p25730 Brassica napus HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
C08p34090 Brassica napus HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
BolC6t37735H Brassica oleracea HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
BolC8t51008H Brassica oleracea HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
BraA07t30079Z Brassica rapa HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
BraA09t40572Z Brassica rapa HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
Carub.0005s2554 Capsella rubella HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
CARHR169140 Cardamine hirsuta HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 60.8
Cpa.g.sc50.64 Carica papaya HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
ClCG02G018250 Citrullus lanatus HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 57.7
MELO3C019711.2 Cucumis melo HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 57.7
CsaV3_6G015630 Cucumis sativus L. HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 57.7
Glyma.02G288500 Glycine max HOM05D003004 ORTHO05D003860 9.2e-19 96.7 80 55.0
Medtr3g048920 Medicago truncatula HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
SalBow7G3009 Salvia bowleyana HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 59.5
SalBow7G3774 Salvia bowleyana HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 59.5
Sed0013377 Sechium edule HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 57.7
Sc12g0003790 Simmondsia chinensis HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
TPR.G12698 Trifolium pratense HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
TWI14G0060 Tripterygium wilfordii HOM05D003004 ORTHO05D003860 9.2e-19 96.7 74 58.1
GSVIVG01000817001 Vitis vinifera HOM05D003004 ORTHO05D003860 9.2e-19 96.7 78 56.4
ATR0213G001 Amborella trichopoda HOM05D003004 ORTHO05D003860 1.2e-18 96.3 74 58.1
Gohir.A11G059700 Gossypium hirsutum HOM05D003004 ORTHO05D003860 1.2e-18 96.3 76 56.6
Gohir.D11G063800 Gossypium hirsutum HOM05D003004 ORTHO05D003860 1.2e-18 96.3 76 56.6
Gorai.007G069000 Gossypium raimondii HOM05D003004 ORTHO05D003860 1.2e-18 96.3 76 56.6
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla HOM05D003004 ORTHO05D003860 1.2e-18 96.3 74 59.5
Lj6g0001020 Lotus japonicus HOM05D003004 ORTHO05D003860 1.2e-18 96.3 78 55.1
LjContig00310g0022930 Lotus japonicus HOM05D003004 ORTHO05D003860 1.2e-18 96.3 78 56.4
PSO170G1739 Papaver somniferum HOM05D003004 ORTHO05D003860 1.2e-18 96.3 74 60.8
TAR629G1040 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.2e-18 96.3 78 57.7
Aqoxy4G00197 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
AL5G40520 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
AT3G58750 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
Ca_14627_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 53.8
Ca_30924_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 53.8
FvH4_6g37750 Fragaria vesca HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
HanXRQChr13g0386841 Helianthus annuus HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
Mapoly0091s0007 Marchantia polymorpha HOM05D003004 ORTHO05D003860 1.6e-18 95.9 74 59.5
Mapoly0111s0039 Marchantia polymorpha HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
MCO05G529 Micromonas commoda HOM05D003004 ORTHO05D003860 1.6e-18 95.9 80 53.8
Potri.016G089300 Populus trichocarpa HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
Sabra16G0095300 Salix brachista HOM05D003004 ORTHO05D003860 1.6e-18 95.9 78 57.7
Thecc.01G158700 Theobroma cacao HOM05D003004 ORTHO05D003860 1.6e-18 95.9 74 58.1
CiPaw.04G135400 Carya illinoinensis HOM05D003004 ORTHO05D003860 2.1e-18 95.5 78 56.4
COL.COLO4_33706 Corchorus olitorius HOM05D003004 ORTHO05D003860 2.1e-18 95.5 74 58.1
Glyma.14G026400 Glycine max HOM05D003004 ORTHO05D003860 2.1e-18 95.5 78 55.1
Lalb_Chr04g0248661 Lupinus albus HOM05D003004 ORTHO05D003860 2.1e-18 95.5 78 55.1
PRCOL_00002388 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 2.1e-18 95.5 79 55.7
Sp4g24910 Schrenkiella parvula HOM05D003004 ORTHO05D003860 2.1e-18 95.5 74 59.5
Eucgr.A01955 Eucalyptus grandis HOM05D003004 ORTHO05D003860 2.7e-18 95.1 74 58.1
Lalb_Chr10g0106821 Lupinus albus HOM05D003004 ORTHO05D003860 2.7e-18 95.1 78 55.1
Manes.02G086900 Manihot esculenta HOM05D003004 ORTHO05D003860 2.7e-18 95.1 78 56.4
AUR62024005 Chenopodium quinoa HOM05D003004 ORTHO05D003860 3.5e-18 94.7 74 56.8
AUR62036394 Chenopodium quinoa HOM05D003004 ORTHO05D003860 3.5e-18 94.7 74 56.8
FAN05G0272 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.5e-18 94.7 78 56.4
PGR042G3476 Punica granatum HOM05D003004 ORTHO05D003860 3.5e-18 94.7 78 57.7
HPP92_006375 Vanilla planifolia HOM05D003004 ORTHO05D003860 3.5e-18 94.7 74 58.1
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.6e-18 94.4 74 58.1
RcHm_v2.0_Chr2g0150811 Rosa chinensis HOM05D003004 ORTHO05D003860 4.6e-18 94.4 78 56.4
Phvul.006G035500 Phaseolus vulgaris HOM05D003004 ORTHO05D003860 6.0e-18 94.0 79 53.2
Sabra14G0107100 Salix brachista HOM05D003004 ORTHO05D003860 6.0e-18 94.0 78 56.4
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea HOM05D003004 ORTHO05D003860 7.8e-18 93.6 78 52.6
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea HOM05D003004 ORTHO05D003860 7.8e-18 93.6 78 52.6
Glyma.08G311200 Glycine max HOM05D003004 ORTHO05D003860 7.8e-18 93.6 78 55.1
Glyma.18G104400 Glycine max HOM05D003004 ORTHO05D003860 7.8e-18 93.6 78 55.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.0e-17 93.2 78 55.1
Pp3c23_9030 Physcomitrium patens HOM05D003004 ORTHO05D003860 1.0e-17 93.2 78 56.4
SMO367G0491 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 1.0e-17 93.2 78 56.4
VMungo0540G1035 Vigna mungo HOM05D003004 ORTHO05D003860 1.0e-17 93.2 78 53.8
Pp3c12_7740 Physcomitrium patens HOM05D003004 ORTHO05D003860 3.0e-17 91.7 78 55.1
PRCOL_00005692 Prasinoderma coloniale HOM05D003004 ORTHO05D028858 3.0e-17 91.7 61 65.6
Rhsim06G0122300 Rhododendron simsii HOM05D003004 ORTHO05D003860 5.1e-17 90.9 72 58.3
TPR.G20717 Trifolium pratense HOM05D003004 ORTHO05D003860 6.6e-17 90.5 71 56.3
Cre03.g149100 Chlamydomonas reinhardtii HOM05D003004 ORTHO05D003860 2.5e-16 88.6 74 55.4
A09p51290 Brassica napus HOM05D003004 ORTHO05D003860 2.8e-15 85.1 74 54.1
AT3G58740 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 4.7e-15 84.3 75 57.3
BcaC07g40223 Brassica carinata HOM05D003004 ORTHO05D003860 4.7e-15 84.3 74 54.1
BcaC07g40293 Brassica carinata HOM05D003004 ORTHO05D003860 4.7e-15 84.3 74 54.1
C08p34070 Brassica napus HOM05D003004 ORTHO05D003860 4.7e-15 84.3 74 54.1
BolC8t51005H Brassica oleracea HOM05D003004 ORTHO05D003860 4.7e-15 84.3 74 54.1
AL5G40510 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 8.1e-15 83.6 74 54.1
CARHR169120 Cardamine hirsuta HOM05D003004 ORTHO05D003860 3.1e-14 81.6 74 52.7
SMO115G0146 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 4.0e-14 81.3 74 54.1
Thhalv10006483m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 6.8e-14 80.5 74 54.1
Gorai.001G142600 Gossypium raimondii HOM05D003004 ORTHO05D003860 1.2e-13 79.7 76 51.3
BraA09t40571Z Brassica rapa HOM05D003004 ORTHO05D003860 1.5e-13 79.3 74 54.1
Gohir.D01G097233 Gossypium hirsutum HOM05D003004 ORTHO05D003860 2.0e-13 79.0 76 52.6
C04p33750 Brassica napus HOM05D003004 ORTHO05D003860 3.4e-13 78.2 74 50.0
BolC4t24943H Brassica oleracea HOM05D003004 ORTHO05D003860 3.4e-13 78.2 74 50.0
Gohir.A07G037766 Gossypium hirsutum HOM05D003004 ORTHO05D003860 3.4e-13 78.2 76 51.3
Gohir.A10G071666 Gossypium hirsutum HOM05D003004 ORTHO05D003860 3.4e-13 78.2 76 51.3
Gohir.A13G067766 Gossypium hirsutum HOM05D003004 ORTHO05D003860 3.4e-13 78.2 76 51.3
A04p02380 Brassica napus HOM05D003004 ORTHO05D003860 7.6e-13 77.0 74 50.0
BraA04t15967Z Brassica rapa HOM05D003004 ORTHO05D003860 7.6e-13 77.0 74 50.0
TPR.G13562 Trifolium pratense HOM05D003004 ORTHO05D003860 9.9e-13 76.6 78 48.7
C08p34080 Brassica napus HOM05D003004 ORTHO05D003860 6.4e-12 73.9 73 50.7
DCAR_012665 Daucus carota HOM05D003004 ORTHO05D003860 2.1e-10 68.9 76 48.7
CARHR169130 Cardamine hirsuta HOM05D003004 ORTHO05D003860 3.5e-10 68.2 83 47.0
Ah.01g004780 Amaranthus hybridus HOM05D003004 ORTHO05D003860 2.3e-09 65.5 54 55.6
TAR626G0830 Trochodendron aralioides HOM05D003004 ORTHO05D003860 5.1e-09 64.3 42 64.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.5e-08 62.0 55 54.5
PRCOL_00003102 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 1.6e-07 59.3 66 43.9
Sp5g04100 Schrenkiella parvula HOM05D003004 ORTHO05D003860 1.6e-07 59.3 53 52.8


User provided reference genes

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