Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-56 221.9 106 100.0
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-56 221.9 106 100.0
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.2e-50 203.0 106 88.7
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 2.6e-50 201.8 106 88.7
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 7.5e-50 200.3 106 87.7
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.7e-49 199.1 106 86.8
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.7e-49 199.1 106 86.8
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.7e-49 199.1 106 86.8
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 2.8e-49 198.4 106 86.8
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.8e-49 198.4 106 86.8
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 3.7e-49 198.0 106 87.7
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 8.3e-49 196.8 106 85.8
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.1e-48 196.4 106 84.9
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.1e-48 196.4 106 86.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.1e-48 196.4 106 87.7
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 3.1e-48 194.9 106 84.9
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-48 194.5 106 84.0
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-48 194.5 106 84.0
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-48 194.5 106 84.0
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-48 194.5 106 84.0
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 5.4e-48 194.1 106 85.8
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 7.0e-48 193.7 106 84.9
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.0e-48 193.7 106 84.9
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 7.0e-48 193.7 106 85.8
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 7.0e-48 193.7 106 84.0
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.1e-48 193.4 106 84.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 9.1e-48 193.4 106 84.0
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.2e-47 193.0 106 84.0
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-47 193.0 106 84.0
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-47 193.0 106 83.0
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.0e-47 192.2 106 83.0
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.0e-47 192.2 106 84.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.0e-47 192.2 106 84.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 2.7e-47 191.8 106 83.0
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 2.7e-47 191.8 106 83.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.7e-47 191.8 106 83.0
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 3.5e-47 191.4 106 83.0
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 3.5e-47 191.4 106 83.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 3.5e-47 191.4 106 84.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.5e-47 191.0 106 83.0
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 4.5e-47 191.0 106 82.1
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 5.9e-47 190.7 106 81.1
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 5.9e-47 190.7 106 81.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 5.9e-47 190.7 106 84.0
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 5.9e-47 190.7 106 82.1
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 7.7e-47 190.3 106 83.0
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 7.7e-47 190.3 106 83.0
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.7e-47 190.3 106 83.0
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.0e-46 189.9 106 83.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-46 189.9 106 83.0
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.0e-46 189.9 106 83.0
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.3e-46 189.5 106 84.0
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.3e-46 189.5 106 83.0
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.7e-46 189.1 106 82.1
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 2.2e-46 188.7 106 83.0
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 2.2e-46 188.7 106 83.0
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.9e-46 188.3 106 84.9
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.8e-46 188.0 106 84.0
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 5.0e-46 187.6 106 83.0
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 5.0e-46 187.6 106 81.1
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.0e-46 187.6 106 82.1
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 6.5e-46 187.2 106 82.1
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.5e-46 187.2 106 81.1
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.5e-46 187.2 106 81.1
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.5e-46 186.8 106 81.1
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.5e-46 186.8 106 81.1
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.1e-45 186.4 106 81.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-45 186.4 106 80.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-45 186.4 106 80.2
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.5e-45 186.0 107 83.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 5.5e-45 184.1 106 81.1
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 9.5e-45 183.3 106 81.1
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.2e-44 183.0 107 81.3
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.8e-44 181.8 106 80.2
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.8e-44 181.8 106 77.4
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.8e-44 181.8 106 81.1
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 3.6e-44 181.4 106 79.2
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 4.7e-44 181.0 106 79.2
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 4.7e-44 181.0 106 78.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 6.1e-44 180.6 106 78.3
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 8.0e-44 180.3 106 79.2
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 8.0e-44 180.3 106 79.2
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 8.0e-44 180.3 106 79.2
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.0e-43 179.9 108 80.6
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.4e-43 179.5 106 79.2
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-43 179.5 106 79.2
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.4e-43 179.5 106 79.2
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.4e-43 179.5 106 79.2
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.4e-43 179.5 106 77.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.8e-43 179.1 106 79.2
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-43 178.3 106 78.3
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 4.0e-43 177.9 106 79.2
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 4.0e-43 177.9 106 78.3
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 5.2e-43 177.6 106 77.4
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.2e-42 176.4 106 77.4
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.5e-42 176.0 106 78.3
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.5e-42 176.0 106 78.3
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.4e-42 174.9 106 78.3
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 4.4e-42 174.5 106 76.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 4.4e-42 174.5 106 76.4
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 4.4e-42 174.5 106 76.4
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 5.7e-42 174.1 106 78.3
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 9.8e-42 173.3 106 75.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.3e-41 172.9 106 77.4
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.7e-41 172.6 106 76.4
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.7e-41 172.6 106 76.4
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 3.7e-41 171.4 106 75.5
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 4.9e-41 171.0 106 75.5
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 8.3e-41 170.2 106 74.5
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-40 169.9 106 76.4
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 5.4e-40 167.5 106 73.6
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 2.7e-39 165.2 106 73.6
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.8e-39 163.7 92 82.6
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.8e-39 163.7 92 82.6
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.3e-38 162.9 106 68.9
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.6e-38 160.6 92 82.6
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 3.6e-36 154.8 106 67.9
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.7e-36 154.5 106 67.0
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 6.1e-36 154.1 92 78.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.4e-34 148.3 92 77.2
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 3.4e-34 148.3 92 77.2
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 3.4e-34 148.3 107 63.6
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.8e-32 142.5 90 76.7
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.8e-32 142.5 106 66.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 2.4e-32 142.1 104 68.3
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-32 142.1 91 71.4
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 4.1e-32 141.4 111 63.1
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.6e-31 139.4 89 71.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 5.8e-26 120.9 75 74.7
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 2.9e-25 118.6 107 56.1
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.0e-23 112.5 106 48.1
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 4.9e-17 91.3 113 46.9
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-13 80.1 43 90.7
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-13 80.1 43 90.7
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.1e-12 75.9 76 47.4


User provided reference genes

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