Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.5e-173 612.1 318 100.0
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.7e-153 545.0 318 91.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 4.8e-153 544.7 318 89.6
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.5e-151 538.1 316 88.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.1e-149 533.5 287 97.9
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.9e-133 479.6 317 79.2
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.4e-128 463.4 317 76.3
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.2e-128 462.2 317 77.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.5e-125 453.4 318 75.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.4e-123 446.8 318 74.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 3.0e-118 429.1 315 69.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.9e-109 399.8 313 69.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.5e-109 399.4 317 67.8
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 7.3e-109 397.9 315 64.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.2e-108 394.8 343 65.9
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.1e-99 365.9 316 62.7
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 5.3e-99 365.2 317 61.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 5.3e-99 365.2 316 64.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.9e-98 360.9 313 63.6
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.2e-96 355.5 297 65.0
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 4.6e-95 352.1 315 59.4
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.6e-95 352.1 316 58.9
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.8e-94 350.1 316 58.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.9e-94 349.0 316 58.5
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 5.1e-94 348.6 303 62.0
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.1e-94 348.6 318 58.8
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.7e-94 348.2 312 60.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.1e-93 347.4 318 59.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.5e-93 346.3 321 59.2
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.6e-93 345.1 315 60.6
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.6e-92 343.6 304 60.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.6e-92 343.6 321 58.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 4.8e-92 342.0 316 60.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.1e-92 341.3 316 61.4
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 9.9e-90 334.3 318 56.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.3e-89 334.0 314 57.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.9e-88 330.1 312 58.3
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.4e-88 329.7 318 56.3
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 5.5e-88 328.6 322 57.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.1e-87 326.6 281 61.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.7e-87 326.2 293 60.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.5e-87 325.9 320 57.8
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.5e-87 325.9 321 56.7
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.0e-87 325.1 312 57.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.3e-86 323.2 298 57.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.3e-86 323.2 319 55.2
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.0e-86 322.8 315 60.3
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.7e-86 321.6 315 57.5
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 7.4e-85 318.2 318 56.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.3e-84 317.4 315 56.5
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.6e-84 317.0 307 58.0
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 4.8e-84 315.5 324 56.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 6.2e-84 315.1 343 55.7
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.4e-83 313.2 274 61.7
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.0e-83 311.2 314 55.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.6e-82 309.7 318 54.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 7.6e-82 308.1 316 52.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.0e-81 307.8 290 60.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.0e-81 307.8 294 59.5
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.0e-81 307.8 319 54.9
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 4.9e-81 305.4 316 57.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 8.4e-81 304.7 312 54.5
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 8.4e-81 304.7 314 53.5
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.1e-80 304.3 314 53.2
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-80 303.5 317 55.5
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.5e-80 303.1 307 57.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.5e-80 303.1 315 52.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.2e-80 302.8 316 53.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.2e-80 302.4 303 52.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.5e-80 302.0 318 54.1
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.6e-79 300.4 317 53.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.6e-79 300.4 267 61.0
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.6e-79 300.4 313 54.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.1e-79 300.1 315 51.4
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-79 299.7 320 52.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.5e-79 299.3 317 53.3
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.0e-79 298.5 316 50.9
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.3e-78 297.4 316 52.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.8e-78 297.0 316 52.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 6.7e-78 295.0 317 50.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 8.7e-78 294.7 283 56.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.5e-77 293.9 317 51.7
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.9e-77 293.5 316 52.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.3e-77 292.4 317 51.4
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.7e-77 292.0 320 51.2
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 7.4e-77 291.6 317 52.4
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 9.7e-77 291.2 317 53.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.3e-76 290.8 322 50.6
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.6e-76 290.4 283 56.2
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.6e-76 290.4 298 53.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.2e-76 290.0 320 52.2
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 4.8e-76 288.9 320 50.9
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.8e-76 288.9 324 52.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 6.3e-76 288.5 317 53.9
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.2e-76 288.1 317 51.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.2e-76 288.1 319 49.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-75 287.7 320 50.9
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-75 287.7 319 50.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-75 287.7 320 50.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-75 287.7 319 50.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-75 287.3 320 50.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-75 287.3 319 50.2
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-75 287.3 319 50.2
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.4e-75 287.3 319 50.2
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-75 287.0 320 51.2
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-75 287.0 320 51.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-75 286.2 320 51.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 9.0e-75 284.6 320 50.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 9.0e-75 284.6 315 50.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.5e-74 283.9 317 51.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.4e-74 282.7 317 48.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 49.2
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 48.9
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.7e-73 280.4 317 50.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-73 280.0 319 48.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.2e-73 280.0 319 48.3
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.2e-73 280.0 319 48.3
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 3.8e-73 279.3 319 49.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 8.5e-73 278.1 316 50.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.5e-72 276.6 312 51.9
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-71 274.2 258 56.2
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 6.1e-71 271.9 390 47.7
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-70 270.4 318 48.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.3e-70 270.0 320 48.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.0e-70 269.6 258 55.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.5e-69 267.3 412 42.5
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.3e-69 266.2 316 48.1
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.1e-67 259.6 259 57.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.3e-67 258.8 313 47.6
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 9.1e-67 258.1 318 48.7
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.2e-66 257.7 260 52.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.5e-66 255.8 317 47.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.7e-63 246.5 315 45.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.1e-61 241.1 315 45.1
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.1e-59 234.6 326 45.7
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 4.8e-52 209.1 221 50.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.7e-41 174.1 214 47.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.2e-40 169.9 245 38.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.2e-37 161.4 164 54.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 8.3e-36 155.2 170 53.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 6.6e-33 145.6 322 33.5
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.7e-31 139.4 162 50.0
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-28 131.0 86 77.9
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.7e-28 129.8 318 32.1
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.9e-28 129.4 318 31.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.8e-27 127.5 193 43.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 7.8e-26 122.1 321 32.1
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.0e-23 112.1 135 42.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-22 110.5 135 41.5
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.4e-19 100.5 115 52.2
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.6e-18 97.8 107 54.2
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-16 91.7 83 60.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-16 91.7 83 60.2
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.1e-15 87.4 92 53.3
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.8e-15 87.0 87 56.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 6.2e-15 85.9 74 54.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 6.2e-15 85.9 74 54.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 6.2e-15 85.9 74 54.1
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 8.9e-14 82.0 76 51.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.4e-11 74.7 122 41.8
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 2.8e-07 60.5 317 23.0
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 8.1e-07 58.9 40 72.5
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 4.0e-06 56.6 131 32.1


User provided reference genes

Program Settings