Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.6e-186 654.4 335 100.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.6e-183 644.8 337 98.8
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.7e-127 459.9 335 73.1
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 4.1e-126 455.3 327 74.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.5e-125 453.4 309 78.6
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-125 453.4 328 72.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.0e-117 426.4 335 69.0
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.3e-116 423.7 335 68.4
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.6e-112 409.5 335 66.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.8e-111 406.0 354 64.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 7.0e-110 401.4 354 64.4
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.3e-100 369.8 339 60.2
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.8e-98 362.8 347 58.8
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.5e-85 319.3 346 52.0
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.8e-80 301.2 336 50.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.7e-79 299.3 331 51.1
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.9e-75 287.0 336 47.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.5e-75 284.6 331 49.5
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.1e-74 283.5 333 48.3
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.2e-74 282.0 333 46.2
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.3e-73 280.0 330 47.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.4e-72 276.2 324 46.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.7e-71 273.9 370 44.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.4e-71 271.9 324 46.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 8.3e-71 271.6 324 46.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 8.3e-71 271.6 310 48.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 3.2e-70 269.6 358 45.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 8.6e-68 261.5 333 46.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.3e-67 259.6 360 41.7
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.8e-65 253.8 349 43.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.4e-65 253.4 338 43.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.0e-65 252.7 359 42.6
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.2e-65 252.3 314 44.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 8.9e-65 251.5 327 45.3
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.2e-64 251.1 362 41.7
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.0e-64 250.4 336 42.3
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.4e-64 249.6 336 44.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 5.8e-64 248.8 358 41.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 7.6e-64 248.4 228 54.4
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.2e-63 246.9 338 42.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 2.2e-63 246.9 333 43.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.1e-62 244.6 239 55.2
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 9.2e-62 241.5 338 41.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.2e-62 241.5 338 41.4
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.1e-61 240.4 329 41.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.1e-61 240.4 376 39.9
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.7e-61 240.0 338 41.7
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 6.0e-61 238.8 330 40.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-60 237.7 336 40.8
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 3.0e-60 236.5 333 42.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 3.0e-60 236.5 328 43.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.7e-60 235.0 334 41.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 8.7e-60 235.0 323 42.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.9e-59 233.8 354 41.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 6.9e-57 225.3 339 41.6
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.6e-56 223.4 342 37.1
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.4e-56 223.0 337 37.7
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.2e-55 220.3 332 38.6
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-54 217.2 330 40.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.9e-54 217.2 360 36.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.4e-54 216.9 336 38.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.2e-54 216.1 333 36.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.2e-54 216.1 244 48.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.2e-54 216.1 331 37.5
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.4e-54 215.7 364 36.3
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.2e-53 214.5 337 37.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.7e-53 213.4 227 52.4
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.7e-53 213.4 224 51.3
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.7e-53 213.4 338 38.5
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.5e-53 213.0 333 36.9
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.5e-53 213.0 358 36.0
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 6.0e-53 212.2 331 38.4
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-52 211.5 338 38.2
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.3e-52 211.1 334 36.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.3e-52 210.3 328 37.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.6e-52 208.8 332 36.4
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.5e-51 207.6 268 42.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.3e-51 206.5 333 39.3
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.6e-51 205.7 335 36.7
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.3e-51 205.3 309 37.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.1e-50 201.8 343 35.6
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-49 201.1 309 38.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.8e-49 200.7 337 36.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.3e-49 199.1 345 37.4
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 9.0e-49 198.4 337 37.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-48 197.2 333 36.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.6e-48 196.8 332 35.2
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 5.8e-48 195.7 337 36.8
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.3e-47 194.5 342 35.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.3e-47 194.5 333 34.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.7e-47 194.1 378 32.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.7e-47 194.1 341 39.0
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.8e-47 193.0 337 36.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.8e-47 193.0 332 33.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 6.4e-47 192.2 337 36.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.1e-45 187.2 219 44.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 2.1e-45 187.2 369 32.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 7.4e-43 178.7 318 35.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.6e-42 177.6 318 35.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.8e-42 176.0 318 35.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.3e-41 172.6 176 51.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-40 170.6 337 33.5
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.9e-39 166.0 174 50.0
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.4e-38 164.5 285 36.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-37 161.0 367 31.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-35 154.1 135 54.1
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 6.2e-34 149.1 281 36.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.1e-33 148.3 221 39.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.4e-33 147.9 237 36.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.5e-32 144.4 337 31.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.0e-32 144.1 127 58.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.5e-30 137.1 329 31.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.2e-29 134.8 170 41.8
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 5.7e-27 125.9 201 37.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.2e-26 124.0 224 35.7
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.5e-24 117.9 322 29.2
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 2.6e-24 117.1 195 38.5
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 3.8e-23 113.2 330 27.9
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.1e-21 107.5 127 57.5
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 6.1e-21 105.9 179 36.9
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.9e-20 103.2 81 61.7
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-18 98.2 195 30.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-18 97.8 80 53.8
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.2e-18 97.4 198 28.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.8e-18 96.3 331 26.0
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.6e-16 90.5 187 32.1
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-14 85.1 81 51.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.2e-14 83.6 148 37.2
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 9.4e-14 82.0 198 27.3
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.6e-13 80.1 248 25.0
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.6e-13 80.1 248 25.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 6.1e-13 79.3 151 35.1
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-12 78.2 175 31.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-09 68.2 134 35.8


User provided reference genes

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