Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1550.8 891 100.0
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1523.8 864 100.0
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1249.6 868 82.9
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1242.6 868 79.6
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1222.2 872 79.7
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1201.4 889 78.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1186.4 860 75.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1184.1 866 76.6
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1171.8 873 73.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1152.5 863 76.1
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1144.0 868 75.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1127.1 865 74.2
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1102.8 803 74.0
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.4e-306 1056.2 873 67.7
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 9.3e-303 1043.5 895 65.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.6e-299 1032.7 895 63.6
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 7.6e-297 1023.8 890 64.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 3.8e-296 1021.5 854 66.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 3.2e-295 1018.5 866 64.3
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.3e-293 1013.1 868 65.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 3.7e-291 1005.0 875 64.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 6.3e-291 1004.2 865 64.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 3.4e-289 998.4 872 65.1
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.4e-287 993.0 875 62.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.4e-287 990.3 866 63.6
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.6e-286 989.6 866 65.0
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.7e-286 988.8 865 64.9
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.3e-285 985.7 872 62.7
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.0e-284 982.6 872 62.6
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 4.3e-284 981.5 879 61.2
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 7.4e-284 980.7 865 63.5
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 8.2e-283 977.2 875 64.0
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 7.7e-281 970.7 914 61.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.7e-280 969.5 864 65.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 3.8e-280 968.4 865 62.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 3.2e-279 965.3 876 61.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.5e-279 964.5 865 62.0
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 7.2e-279 964.1 873 60.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 7.9e-278 960.7 876 63.1
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 3.9e-277 958.4 883 62.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.1e-276 956.8 888 61.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.6e-276 955.7 894 61.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 5.7e-276 954.5 880 60.9
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.3e-275 953.4 891 61.8
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.8e-275 952.2 884 62.4
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.4e-274 949.1 884 62.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.1e-274 948.7 884 62.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.3e-274 948.0 874 61.4
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.6e-273 945.7 864 60.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.6e-273 945.7 865 61.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.2e-272 942.6 864 61.6
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 3.8e-272 941.8 873 65.1
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.5e-271 939.1 907 60.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 3.2e-271 938.7 858 60.4
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.7e-270 935.6 880 61.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.3e-269 932.6 879 59.3
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 8.8e-269 930.6 876 61.2
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.3e-267 926.8 885 59.3
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 8.2e-267 924.1 860 63.1
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.4e-266 923.3 869 60.1
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.8e-266 922.9 880 60.5
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 5.3e-266 921.4 873 59.3
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.2e-265 920.2 880 58.8
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.0e-264 914.8 871 58.0
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.5e-264 914.4 866 58.8
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 8.5e-264 914.1 866 60.2
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.9e-263 912.9 869 60.5
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.9e-263 912.9 880 61.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 2.5e-263 912.5 895 58.2
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 2.7e-262 909.1 881 59.5
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 8.0e-262 907.5 863 59.9
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 8.0e-262 907.5 860 59.7
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 2.0e-260 902.9 1020 55.1
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.1e-258 897.1 889 59.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 9.1e-258 894.0 886 58.1
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-257 892.9 884 59.8
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 6.5e-256 887.9 866 59.4
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.6e-254 883.2 862 58.6
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.1e-254 881.3 865 59.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.8e-253 879.8 866 58.5
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 5.2e-253 878.2 881 56.6
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.2e-252 877.1 875 57.9
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.7e-251 872.1 858 56.9
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 5.5e-247 858.2 906 54.9
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.2e-246 857.1 869 60.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 6.1e-246 854.7 874 56.1
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.1e-242 842.0 874 56.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 9.2e-242 840.9 889 55.6
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 3.9e-240 835.5 871 56.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.4e-237 827.0 874 54.9
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.3e-237 826.2 892 52.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 8.6e-232 807.7 889 53.7
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.4e-228 795.4 874 53.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.7e-227 793.5 890 51.9
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 4.6e-225 785.4 863 54.3
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 4.3e-223 778.9 876 51.8
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.4e-218 763.8 733 57.7
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 5.6e-215 751.9 889 50.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.7e-211 740.3 650 61.2
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.3e-207 724.9 621 63.4
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.2e-195 686.8 602 63.8
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.3e-189 665.6 634 59.1
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.4e-188 662.9 867 47.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.1e-186 655.2 545 65.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.1e-183 647.9 859 48.0
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.5e-178 630.2 737 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.1e-173 614.8 763 46.1
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.7e-166 590.9 907 41.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.8e-166 590.1 566 61.3
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.3e-158 564.7 750 50.8
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.3e-152 543.9 509 61.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 3.8e-147 526.6 823 41.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-138 498.4 745 45.4
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-130 471.9 480 54.0
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.3e-130 470.3 873 37.9
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.8e-125 454.5 397 63.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.2e-119 435.3 368 64.7
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.5e-98 365.2 808 35.4
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.8e-97 360.9 367 57.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.6e-81 308.5 647 36.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-79 302.4 320 54.4
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.7e-78 298.5 630 38.7
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.0e-63 248.4 438 38.1
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.1e-60 238.4 276 61.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 6.1e-60 236.9 770 28.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.6e-52 212.2 209 56.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.7e-47 193.4 236 51.3
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.2e-45 186.8 178 58.4
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.8e-38 164.5 98 79.6
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.3e-33 149.4 122 69.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 6.5e-30 137.1 244 42.2
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.6e-28 132.5 180 47.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 5.2e-27 127.5 132 53.8
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.6e-20 104.8 58 84.5
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.2e-18 99.8 51 92.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 3.7e-17 94.7 79 57.0
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-16 92.8 80 58.8
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 1.5e-10 72.8 55 74.5
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 2.0e-10 72.4 60 71.7
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 2.0e-10 72.4 56 73.2
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 7.5e-10 70.5 63 60.3
Psat3g037200 Pisum sativum HOM05D001007 ORTHO05D012393 2.9e-09 68.6 55 69.1
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 3.7e-09 68.2 61 62.3
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.4e-08 66.2 42 71.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.4e-08 66.2 42 71.4
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.8e-08 65.9 64 59.4
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 5.4e-08 64.3 42 69.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 5.4e-08 64.3 42 69.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.2e-07 63.2 42 66.7
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.3e-06 59.7 36 75.0


User provided reference genes

Program Settings