Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.8e-87 324.7 153 100.0
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.8e-87 324.7 153 100.0
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.5e-70 268.9 153 79.7
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 7.7e-64 247.3 139 81.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.3e-63 246.5 152 76.3
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.9e-63 245.4 153 73.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.8e-63 245.0 153 77.8
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.0e-60 236.9 158 70.9
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.0e-60 236.9 152 71.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 3.0e-60 235.3 147 73.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.3e-55 219.9 151 68.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-55 219.5 138 70.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-54 216.5 139 68.3
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-54 216.1 152 66.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.2e-54 215.3 151 65.6
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.6e-53 213.0 140 69.3
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.1e-53 212.6 151 67.5
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.7e-53 212.2 139 67.6
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.7e-53 211.5 145 69.0
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 8.0e-53 210.7 137 70.1
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.0e-52 210.3 154 65.6
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.4e-52 209.9 140 67.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.3e-52 209.1 139 66.9
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.0e-52 208.8 140 67.1
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 3.0e-52 208.8 143 65.0
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 6.8e-52 207.6 139 67.6
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 8.8e-52 207.2 140 67.9
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 3.4e-51 205.3 150 66.7
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 4.4e-51 204.9 143 67.8
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 4.4e-51 204.9 140 67.1
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 5.7e-51 204.5 143 64.3
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-50 203.0 142 64.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.2e-50 202.6 140 66.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.8e-50 202.2 142 64.1
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.7e-50 201.8 142 64.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 3.7e-50 201.8 140 66.4
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 3.7e-50 201.8 137 66.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.8e-50 201.4 147 65.3
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.8e-50 201.4 151 62.9
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.3e-50 201.1 142 63.4
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 6.3e-50 201.1 151 63.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 8.3e-50 200.7 140 68.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.4e-49 199.9 154 61.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.8e-49 199.5 151 65.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.4e-49 199.1 137 67.2
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 2.4e-49 199.1 143 66.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 4.1e-49 198.4 138 65.9
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.0e-49 197.6 146 58.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 7.0e-49 197.6 137 65.0
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 9.1e-49 197.2 137 67.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 9.1e-49 197.2 151 60.3
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.1e-49 197.2 137 70.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.1e-49 197.2 137 70.1
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-48 196.8 154 63.6
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.2e-48 196.8 145 64.1
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 2.0e-48 196.1 150 58.7
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.5e-48 195.3 149 57.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.5e-48 194.9 152 63.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 5.9e-48 194.5 136 64.0
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.0e-47 193.7 141 63.8
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.3e-47 193.4 137 65.7
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.3e-47 193.4 144 58.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.3e-47 193.4 144 58.3
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.7e-47 193.0 138 65.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.2e-47 192.6 141 65.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.2e-47 192.6 136 64.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.9e-47 192.2 146 63.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 2.9e-47 192.2 144 63.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.9e-47 192.2 138 61.6
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 3.8e-47 191.8 136 64.7
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 3.8e-47 191.8 137 65.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 5.0e-47 191.4 137 66.4
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 6.5e-47 191.0 150 60.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.1e-46 190.3 138 65.2
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.2e-46 188.7 140 64.3
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.2e-46 188.7 138 65.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.2e-46 188.7 138 64.5
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.2e-46 188.7 143 60.1
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-46 188.7 140 60.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.2e-46 188.7 139 63.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 4.2e-46 188.3 138 63.8
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 4.2e-46 188.3 138 64.5
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.2e-46 188.3 138 64.5
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 7.2e-46 187.6 137 65.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 9.4e-46 187.2 131 66.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-45 186.8 146 58.2
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-45 186.8 146 58.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.2e-45 186.8 142 62.0
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-45 186.8 152 58.6
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-45 186.4 142 62.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.7e-45 185.7 142 59.2
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.1e-45 184.5 191 51.8
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 8.0e-45 184.1 139 61.9
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 8.0e-45 184.1 145 60.0
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-44 183.3 138 57.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.4e-44 183.3 157 58.6
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.3e-44 182.6 145 60.7
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.0e-44 181.8 137 61.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 5.2e-44 181.4 138 61.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.8e-44 181.0 139 61.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.8e-44 181.0 140 58.6
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 8.8e-44 180.6 157 58.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-43 180.3 137 60.6
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-43 179.9 137 59.9
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-43 179.9 137 59.9
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-43 179.9 137 59.9
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.7e-43 177.9 143 55.2
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 7.5e-43 177.6 152 54.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 7.5e-43 177.6 152 54.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.5e-43 177.6 139 59.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 9.8e-43 177.2 138 59.4
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-42 176.4 140 56.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.2e-42 176.0 137 61.3
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.8e-42 175.6 140 56.4
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-42 175.6 142 61.3
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.7e-42 175.3 148 58.8
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-42 174.9 140 57.1
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 4.9e-42 174.9 144 59.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-41 173.7 138 57.2
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.1e-41 172.2 136 56.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.1e-41 172.2 136 56.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.0e-40 169.5 136 56.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 3.5e-40 168.7 147 55.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 4.5e-40 168.3 141 59.6
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-39 166.8 140 57.1
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.7e-39 166.4 139 57.6
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.3e-39 166.0 140 57.1
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 2.3e-39 166.0 131 61.8
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.9e-39 165.6 143 58.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.0e-39 164.9 141 56.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 6.6e-39 164.5 138 55.1
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.6e-39 164.1 147 54.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.6e-39 164.1 139 56.8
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-38 163.7 137 57.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.8e-36 156.4 136 51.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 6.8e-36 154.5 115 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 8.9e-36 154.1 142 50.7
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.6e-35 152.5 139 53.2
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 3.4e-35 152.1 140 48.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 5.7e-35 151.4 135 55.6
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.3e-34 150.2 157 51.6
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.2e-34 149.4 101 65.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.9e-34 149.1 137 56.2
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.4e-33 146.7 143 47.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.1e-33 145.2 204 38.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-31 140.6 140 48.6
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 6.6e-31 137.9 115 59.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 3.3e-30 135.6 142 47.2
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.1e-29 132.9 101 58.4
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 8.0e-29 131.0 141 48.2
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.0e-28 130.6 140 45.7
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.0e-27 126.3 149 44.3
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-22 109.8 133 47.4
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.1e-21 106.3 133 41.4
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.7e-21 105.1 133 44.4
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.4e-19 99.0 119 42.9
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 3.2e-17 92.4 78 64.1
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.4e-17 91.7 107 48.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 3.5e-16 89.0 104 41.3
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.3e-15 86.3 72 52.8
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-15 84.3 59 64.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.3e-14 82.4 62 61.3
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 4.3e-14 82.0 41 75.6
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.5e-14 80.9 67 59.7
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-11 73.2 52 57.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 2.0e-11 73.2 69 59.4
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 7.1e-09 64.7 35 68.6
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 1.3e-07 60.5 79 43.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.0e-07 59.3 68 51.5


User provided reference genes

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