Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.1e-123 445.7 223 100.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.1e-106 390.2 222 86.9
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 4.5e-105 384.8 222 85.1
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 7.2e-103 377.5 224 85.7
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.7e-91 339.7 175 97.7
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.4e-90 336.7 226 76.5
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.7e-89 332.4 226 75.2
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.7e-83 313.2 225 70.7
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 3.7e-83 312.0 227 72.2
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 4.8e-83 311.6 228 69.7
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.1e-82 310.5 231 68.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 5.4e-82 308.1 226 67.3
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 7.0e-82 307.8 228 70.6
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.6e-81 306.6 227 70.5
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-81 306.2 228 70.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.7e-81 305.8 228 70.6
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.5e-81 305.1 246 67.9
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 6.5e-80 301.2 233 66.5
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.1e-79 300.4 232 66.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.9e-79 299.7 233 66.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.2e-79 298.9 228 69.3
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 9.4e-79 297.4 233 68.7
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.1e-78 296.2 229 67.2
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 6.1e-78 294.7 233 67.8
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 8.0e-78 294.3 231 66.7
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 8.8e-77 290.8 234 65.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.2e-76 290.4 232 63.4
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.3e-75 287.0 233 63.9
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 2.2e-75 286.2 234 64.1
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.2e-75 286.2 233 65.2
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.7e-75 285.4 227 62.6
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 6.3e-75 284.6 240 61.7
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 6.3e-75 284.6 228 65.8
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.1e-74 283.9 233 63.5
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.4e-74 283.5 206 69.4
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.8e-74 283.1 235 62.1
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 3.1e-74 282.3 232 62.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.0e-74 281.2 235 63.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 9.2e-74 280.8 231 61.9
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.6e-73 280.0 218 64.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.0e-73 279.6 231 64.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 2.7e-73 279.3 215 65.1
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.5e-73 278.9 217 65.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.5e-73 278.9 235 63.4
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 5.9e-73 278.1 232 60.8
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 7.7e-73 277.7 231 62.3
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.3e-72 276.9 216 63.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.7e-72 276.6 216 63.4
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.9e-72 275.8 233 60.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.8e-72 275.4 231 62.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.8e-72 275.4 223 63.2
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.8e-72 275.4 232 62.1
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.5e-71 272.7 218 64.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.1e-70 269.6 216 63.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.4e-69 266.9 224 59.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.4e-69 266.9 217 63.1
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.3e-69 266.2 231 58.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 3.0e-69 265.8 216 61.6
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 4.0e-69 265.4 234 61.5
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 6.8e-69 264.6 233 60.1
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.4e-68 262.3 234 61.1
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 4.4e-68 261.9 229 61.6
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.7e-68 261.5 217 61.8
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 9.8e-68 260.8 228 59.6
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.3e-67 260.4 233 59.7
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.7e-67 260.0 230 58.3
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.7e-67 260.0 225 61.3
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.9e-67 258.5 216 60.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 4.1e-66 255.4 210 63.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 5.4e-66 255.0 212 62.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 7.0e-66 254.6 235 59.6
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 2.0e-65 253.1 233 59.2
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.7e-65 252.7 232 59.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.0e-64 250.8 236 58.5
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.3e-64 250.4 226 60.6
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.5e-63 246.9 217 59.4
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.5e-63 246.9 217 59.4
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.9e-63 246.5 214 61.2
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.9e-63 246.5 233 56.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 4.3e-63 245.4 214 58.4
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 5.6e-63 245.0 229 57.2
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 5.6e-63 245.0 234 57.3
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.2e-62 243.8 229 57.2
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.1e-62 243.0 234 56.8
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.1e-62 243.0 232 56.5
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 4.7e-62 241.9 240 56.2
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 8.0e-62 241.1 231 58.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.0e-61 240.7 237 58.6
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.0e-61 240.7 237 52.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 4.0e-61 238.8 236 54.2
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.5e-60 236.9 226 56.6
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 7.5e-60 234.6 229 54.1
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.7e-59 233.4 209 56.0
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.1e-58 228.8 249 53.4
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.2e-57 227.3 236 57.2
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 3.0e-56 222.6 221 52.5
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 7.3e-55 218.0 285 46.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.6e-54 216.9 278 45.7
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.1e-54 216.5 228 52.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 6.8e-53 211.5 232 55.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 3.4e-52 209.1 236 50.4
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.2e-49 200.7 164 60.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 6.0e-49 198.4 230 53.9
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.3e-48 196.4 236 47.5
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 3.0e-48 196.1 227 50.2
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 6.6e-48 194.9 230 49.1
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.9e-47 193.4 170 60.6
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 4.0e-45 185.7 231 48.9
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 5.2e-45 185.3 269 43.9
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 7.1e-42 174.9 212 46.7
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 5.1e-40 168.7 233 43.8
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.6e-38 163.7 140 60.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 8.1e-38 161.4 232 43.5
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 4.0e-37 159.1 226 43.4
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 8.4e-35 151.4 134 58.2
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 9.3e-34 147.9 181 46.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.0e-32 144.4 128 60.9
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.0e-32 144.4 226 40.3
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.0e-32 142.9 237 40.9
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.5e-28 130.6 84 67.9
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 2.2e-27 126.7 128 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.1e-26 124.4 134 47.8
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.7e-25 119.8 94 62.8
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.0e-24 117.9 95 60.0
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.0e-24 117.9 192 37.5
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.3e-23 112.5 137 47.4
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.4e-20 102.8 98 52.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.9e-18 97.1 110 44.5
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 5.5e-18 95.5 154 39.0
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 7.1e-18 95.1 152 36.2
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.2e-17 94.4 94 57.4
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.9e-15 87.0 134 41.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.9e-15 87.0 134 44.0
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 3.7e-14 82.8 113 47.8
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.5e-12 77.4 174 28.7
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 7.6e-12 75.1 77 50.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.3e-11 74.3 73 53.4
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 2.9e-11 73.2 104 47.1
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.1e-10 71.2 84 50.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.5e-07 60.1 41 63.4


User provided reference genes

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