Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 5.3e-128 461.1 240 100.0
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 9.8e-106 387.1 226 91.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 1.8e-83 313.2 197 81.2
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 4.1e-80 302.0 197 79.2
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 1.2e-79 300.4 197 78.2
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 6.0e-79 298.1 197 77.2
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 7.3e-77 291.2 197 77.2
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 3.6e-76 288.9 191 78.0
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.1e-75 287.3 172 83.7
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 1.8e-75 286.6 172 84.3
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 3.1e-75 285.8 197 75.1
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 9.8e-74 280.8 198 74.2
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.3e-73 280.4 172 79.1
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 2.9e-73 279.3 217 69.6
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 6.4e-73 278.1 199 72.4
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.9e-72 276.6 175 75.4
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 3.2e-72 275.8 172 77.9
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 4.1e-72 275.4 198 73.2
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 5.4e-72 275.0 172 77.9
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 1.6e-71 273.5 199 75.9
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 2.1e-71 273.1 172 76.7
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 2.1e-71 273.1 172 77.3
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 2.1e-71 273.1 174 76.4
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.7e-71 272.7 172 77.9
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 4.6e-71 271.9 172 77.3
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 4.6e-71 271.9 172 77.3
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 7.8e-71 271.2 172 77.9
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 1.7e-70 270.0 172 75.6
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 2.3e-70 269.6 172 75.6
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 6.6e-70 268.1 172 75.0
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 8.6e-70 267.7 172 75.6
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.1e-69 267.3 172 75.0
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 3.3e-69 265.8 172 75.6
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 4.3e-69 265.4 172 76.2
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 8.1e-68 261.2 172 73.8
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 8.1e-68 261.2 197 67.5
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 1.4e-67 260.4 172 72.7
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 1.8e-67 260.0 172 70.9
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 1.8e-67 260.0 172 72.7
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 3.1e-67 259.2 172 72.7
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.0e-67 258.8 174 72.4
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 4.0e-67 258.8 172 70.9
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 8.9e-67 257.7 172 72.7
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 8.9e-67 257.7 172 72.1
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.2e-66 257.3 174 72.4
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.0e-66 256.5 172 73.8
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 2.0e-66 256.5 172 73.3
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 2.6e-66 256.1 172 72.7
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 2.6e-66 256.1 172 73.8
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.4e-66 255.8 172 72.1
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 4.4e-66 255.4 172 72.1
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 5.8e-66 255.0 172 72.1
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 5.8e-66 255.0 199 63.8
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 5.8e-66 255.0 172 72.7
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 7.6e-66 254.6 172 72.7
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 7.6e-66 254.6 172 72.1
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.3e-65 253.8 197 65.5
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 2.2e-65 253.1 172 71.5
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 2.9e-65 252.7 175 70.3
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 3.8e-65 252.3 172 72.1
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 8.4e-65 251.1 199 62.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 1.9e-64 250.0 199 62.8
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.9e-64 250.0 172 71.5
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 2.4e-64 249.6 199 61.3
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 5.4e-64 248.4 199 63.3
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.2e-64 247.7 173 72.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.6e-63 246.9 172 71.5
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 2.1e-63 246.5 172 70.9
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.7e-63 246.1 199 60.3
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 2.7e-63 246.1 174 70.7
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 2.7e-63 246.1 172 73.3
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 4.6e-63 245.4 199 66.8
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 6.6e-62 241.5 199 58.8
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 8.6e-62 241.1 174 66.7
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 9.6e-61 237.7 171 68.4
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 3.6e-60 235.7 174 65.5
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 4.7e-60 235.3 174 67.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 4.7e-60 235.3 174 66.1
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 4.7e-60 235.3 175 69.1
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 6.2e-60 235.0 174 65.5
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 1.1e-59 234.2 175 68.0
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 1.4e-59 233.8 174 65.5
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.8e-59 233.4 172 66.3
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 2.4e-59 233.0 171 66.1
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 3.1e-59 232.6 174 64.4
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 3.1e-59 232.6 174 64.4
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 3.1e-59 232.6 174 65.5
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 5.2e-59 231.9 174 64.4
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 6.9e-59 231.5 174 63.2
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 1.2e-58 230.7 172 64.5
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 3.4e-58 229.2 172 64.0
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 5.8e-58 228.4 171 64.9
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 7.6e-58 228.0 171 66.1
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 2.9e-57 226.1 200 57.5
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 3.8e-57 225.7 174 63.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 4.9e-57 225.3 174 63.8
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 4.9e-57 225.3 208 56.2
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 1.4e-56 223.8 187 62.0
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.9e-56 223.4 170 67.6
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.5e-55 219.2 196 57.1
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 4.6e-55 218.8 196 57.1
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 6.0e-55 218.4 171 62.6
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 8.7e-54 214.5 174 64.9
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 2.1e-52 209.9 138 73.9
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 1.1e-51 207.6 171 61.4
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.1e-48 197.6 176 58.0
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.2e-48 195.7 156 60.3
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 5.4e-48 195.3 174 57.5
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 7.1e-48 194.9 174 58.0
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 9.3e-48 194.5 174 57.5
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 9.3e-48 194.5 174 58.0
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 8.7e-46 188.0 180 60.0
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.5e-42 177.2 162 56.8
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.7e-41 173.7 172 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 3.8e-41 172.6 197 46.7
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 3.2e-40 169.5 198 46.0
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.5e-40 168.7 208 47.6
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 1.3e-38 164.1 175 49.1
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 3.7e-36 156.0 173 45.7
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.4e-35 153.3 101 75.2
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 7.6e-34 148.3 115 61.7
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 4.3e-29 132.5 175 40.6
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 8.7e-22 108.2 72 66.7
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 1.8e-19 100.5 166 39.8
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 4.7e-15 85.9 117 47.9
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 6.7e-14 82.0 116 32.8
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 4.4e-13 79.3 200 23.5
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 7.4e-13 78.6 82 52.4
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 6.3e-12 75.5 71 53.5
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 2.6e-10 70.1 74 48.6
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 1.6e-07 60.8 56 55.4
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 2.1e-07 60.5 36 80.6


User provided reference genes

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