Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-33 146.0 95 100.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-33 146.0 95 100.0
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.7e-24 115.9 88 83.0
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.1e-23 111.7 89 85.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.0e-22 109.0 87 73.6
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.5e-22 108.2 62 85.5
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 5.9e-22 107.5 62 87.1
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.7e-21 105.9 87 77.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.7e-21 105.9 87 85.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.8e-21 104.8 88 81.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 8.5e-21 103.6 62 85.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.1e-20 103.2 62 83.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.1e-20 103.2 62 83.9
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-20 102.4 87 64.4
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.5e-20 102.1 87 78.2
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.2e-20 101.7 87 64.4
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.2e-20 101.7 87 64.4
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 4.2e-20 101.3 87 63.2
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.2e-20 101.3 87 63.2
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.2e-20 101.3 87 63.2
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 4.2e-20 101.3 87 64.4
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.2e-20 101.3 62 83.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 7.2e-20 100.5 92 76.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 7.2e-20 100.5 62 82.3
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 9.4e-20 100.1 87 65.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 9.4e-20 100.1 62 82.3
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.4e-20 100.1 62 79.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-19 99.8 62 79.0
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-19 99.8 62 79.0
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-19 99.8 62 79.0
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-19 99.8 62 79.0
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.2e-19 99.8 62 79.0
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.6e-19 99.4 62 77.4
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.6e-19 99.4 62 80.6
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.6e-19 99.4 62 82.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.6e-19 99.4 62 79.0
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.1e-19 99.0 87 62.1
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-19 99.0 87 62.1
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 2.1e-19 99.0 87 62.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 2.7e-19 98.6 62 79.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-19 98.6 62 79.0
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.6e-19 98.2 62 77.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.6e-19 98.2 62 80.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.6e-19 98.2 87 66.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.7e-19 97.8 87 60.9
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.7e-19 97.8 87 60.9
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 4.7e-19 97.8 87 62.1
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 4.7e-19 97.8 87 66.7
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 6.1e-19 97.4 87 65.5
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 6.1e-19 97.4 62 79.0
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.1e-19 97.4 62 75.8
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 8.0e-19 97.1 62 77.4
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 8.0e-19 97.1 64 78.1
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.0e-18 96.7 62 75.8
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.4e-18 96.3 62 75.8
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 1.8e-18 95.9 87 60.9
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.8e-18 95.9 64 71.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.8e-18 95.9 87 60.9
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.3e-18 95.5 62 74.2
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-18 95.5 62 75.8
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.0e-18 95.1 87 64.4
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.0e-18 94.7 62 75.8
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 6.8e-18 94.0 62 74.2
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.8e-18 94.0 62 74.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.8e-18 93.6 89 64.0
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 8.8e-18 93.6 62 74.2
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.2e-17 93.2 62 75.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.2e-17 93.2 62 75.8
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.2e-17 93.2 62 72.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.2e-17 93.2 62 72.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.5e-17 92.8 87 57.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.5e-17 92.8 62 72.6
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-17 92.8 62 72.6
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.0e-17 92.4 89 67.4
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.6e-17 92.0 62 72.6
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.4e-17 91.7 59 74.6
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 3.4e-17 91.7 63 73.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.4e-17 91.3 62 72.6
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.7e-17 90.9 55 83.6
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.8e-17 90.1 64 73.4
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.8e-17 90.1 63 73.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.3e-16 89.7 62 71.0
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.7e-16 89.4 90 70.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.8e-16 88.6 62 71.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.8e-16 88.6 89 55.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.7e-16 88.2 63 69.8
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.8e-16 87.8 64 71.9
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.8e-16 87.8 64 70.3
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.8e-16 87.8 89 57.3
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 8.3e-16 87.0 65 70.8
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 8.3e-16 87.0 64 70.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-15 86.7 64 71.9
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.1e-15 86.7 89 58.4
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.4e-15 86.3 64 67.2
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.4e-15 86.3 63 73.0
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.8e-15 85.9 64 70.3
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.8e-15 85.9 62 71.0
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.8e-15 85.9 89 58.4
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.4e-15 85.5 66 69.7
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.0e-14 82.4 63 68.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 3.5e-14 81.6 62 66.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 4.5e-14 81.3 62 66.1
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 4.5e-14 81.3 62 64.5
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 5.9e-14 80.9 62 64.5
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 7.7e-14 80.5 89 53.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.0e-13 80.1 64 65.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.3e-13 79.0 61 65.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 3.8e-13 78.2 87 52.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.5e-13 77.4 63 63.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 8.6e-13 77.0 64 64.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.6e-13 77.0 64 64.1
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 8.6e-13 77.0 62 69.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 8.6e-13 77.0 64 64.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.1e-12 76.6 63 63.5
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.5e-12 76.3 59 67.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 4.2e-12 74.7 62 61.3
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 4.2e-12 74.7 64 67.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 7.2e-12 73.9 57 71.9
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.2e-12 73.9 61 70.5
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.5e-12 73.6 63 61.9
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.6e-11 72.8 62 59.7
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.6e-11 72.8 69 60.9
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.6e-11 71.6 64 62.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 8.0e-11 70.5 61 65.6
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 8.0e-11 70.5 57 66.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.0e-10 70.1 63 57.1
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.8e-10 69.3 63 61.9
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.8e-10 69.3 62 62.9
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.0e-10 68.6 62 58.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 5.2e-10 67.8 59 62.7
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.5e-09 66.2 62 56.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-09 65.9 65 56.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.0e-09 65.9 47 70.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.4e-09 64.7 61 57.4
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.7e-09 64.3 59 59.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.4e-07 58.9 44 68.2
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 4.1e-07 58.2 32 87.5
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.2e-06 56.6 54 59.3
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.0e-06 55.8 35 71.4


User provided reference genes

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