Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2485.3 1247 100.0
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2438.7 1258 97.9
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2314.7 1258 92.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2295.0 1274 91.4
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2204.9 1259 87.8
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2201.0 1259 87.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2171.7 1258 86.2
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2136.3 1258 84.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2127.1 1259 84.0
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2118.2 1285 82.6
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2055.8 1257 82.1
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2004.6 1161 85.8
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1261 77.8
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1258 78.1
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1930.6 1258 77.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1259 76.3
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1256 76.4
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1919.1 1258 76.4
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1917.9 1259 76.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1917.9 1258 76.9
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1914.4 1258 76.9
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1913.3 1259 76.5
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1257 76.1
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1257 76.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1258 76.5
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1901.3 1264 75.6
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1900.9 1257 76.1
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1899.4 1257 75.3
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1300 73.8
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1257 75.4
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1273 74.9
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1256 74.9
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1892.9 1256 75.2
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1892.9 1258 75.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1257 74.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1890.5 1256 74.8
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1887.8 1257 74.9
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1887.5 1257 74.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1885.5 1257 74.8
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1881.7 1264 75.0
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1867.4 1257 75.0
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1240 76.5
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1258 74.8
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1854.7 1256 74.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1849.3 1264 72.9
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1841.2 1517 64.7
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1835.8 1259 73.0
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1832.8 1325 70.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1832.8 1263 73.1
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1828.1 1261 73.1
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1822.4 1262 72.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1280 72.1
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1814.3 1259 72.1
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1813.5 1262 72.7
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1810.4 1260 71.7
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1260 71.6
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1260 71.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1261 71.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1803.9 1263 71.4
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1803.5 1261 72.4
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1803.1 1261 71.4
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1803.1 1261 71.3
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1262 71.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1800.0 1290 70.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1796.2 1267 71.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1788.9 1260 70.9
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1787.7 1260 70.9
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1785.8 1257 72.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1784.2 1263 71.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1784.2 1261 70.8
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1784.2 1257 71.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1781.5 1270 70.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1778.5 1259 70.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1778.5 1259 70.5
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1776.1 1257 71.3
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1773.1 1263 70.5
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1766.9 1258 70.9
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1766.5 1258 71.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1765.4 1260 71.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1765.4 1262 70.4
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1764.6 1259 70.5
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1764.2 1242 71.7
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1761.5 1260 71.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1761.1 1260 70.8
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1760.3 1266 70.0
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1753.8 1006 87.8
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1745.3 1169 74.8
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1717.2 1243 69.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1700.6 1270 69.1
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1677.1 1256 66.6
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1675.6 1240 68.6
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1671.8 1322 65.4
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1620.5 1254 65.3
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1534.6 1034 75.1
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1531.5 1231 63.4
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1515.7 1095 69.8
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1513.4 1078 70.6
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1490.7 1265 61.2
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1478.8 1051 71.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1448.7 1033 71.1
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1432.2 1059 69.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1385.5 1093 66.4
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1334.3 1013 67.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1316.2 923 72.7
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1300.8 856 76.1
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1251.5 1389 49.9
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1148.3 1354 46.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1143.3 774 72.7
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1122.5 1249 51.6
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 5.7e-306 1054.7 746 70.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.2e-287 993.8 868 60.4
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 8.0e-276 954.5 871 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 6.7e-275 951.4 1151 45.9
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.5e-274 950.3 1006 53.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 4.7e-244 849.0 592 74.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.8e-228 796.6 538 74.3
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 5.2e-219 765.8 446 87.2
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.8e-187 661.0 1435 32.8
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-179 635.2 450 69.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-156 558.5 490 59.4
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.8e-153 547.0 306 86.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.2e-117 429.1 316 66.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.4e-100 370.2 220 85.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.2e-99 367.9 205 87.3
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-97 361.7 207 88.4
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 7.6e-93 346.7 372 49.2
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-85 322.8 194 78.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.9e-83 315.5 255 61.2
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-81 309.3 317 57.1
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 5.3e-78 297.4 179 81.0
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.6e-74 284.3 159 89.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-72 278.5 262 53.1
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 257 54.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 257 54.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 257 54.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.8e-68 264.6 152 82.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.9e-67 262.3 181 68.5
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.8e-63 248.4 449 35.0
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 9.1e-62 243.4 197 62.4
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.5e-56 226.1 149 70.5
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-56 226.1 164 68.9
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.7e-50 204.5 138 70.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.3e-47 194.1 136 65.4
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.5e-45 188.3 147 63.9
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-44 184.5 121 75.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 6.5e-44 184.1 102 90.2
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.5e-43 181.0 107 76.6
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-41 176.4 107 74.8
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.2e-40 173.3 168 53.0
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.3e-40 171.8 107 72.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.3e-40 171.8 107 72.9
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.8e-39 168.7 98 86.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.8e-39 168.7 106 72.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-38 165.2 127 65.4
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.5e-35 156.4 98 76.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 4.2e-35 154.8 111 70.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.2e-31 142.5 81 76.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.6e-29 136.3 65 92.3
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.7e-29 134.0 78 79.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.5e-27 129.8 123 58.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-27 128.3 87 69.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.2e-27 128.3 79 79.7
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.3e-20 105.9 109 54.1
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.6e-20 104.0 62 77.4
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.5e-19 102.4 107 43.9
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 8.9e-17 94.0 57 75.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.0e-16 92.8 81 59.3
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.7e-15 89.7 571 23.3
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 4.6e-13 81.6 99 46.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.7e-12 79.7 388 21.9
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 9.5e-11 73.9 68 50.0
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.3e-09 69.3 44 77.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 8.9e-09 67.4 52 65.4


User provided reference genes

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