Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.8e-82 309.3 164 100.0
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.2e-59 233.4 164 79.3
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 4.3e-44 181.8 165 62.4
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 3.7e-40 168.7 156 66.0
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 8.3e-40 167.5 164 61.0
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 9.2e-39 164.1 164 59.8
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 4.3e-36 155.2 165 59.4
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 2.8e-35 152.5 166 59.6
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 3.6e-35 152.1 164 58.5
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 3.6e-35 152.1 150 59.3
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 3.1e-34 149.1 164 56.1
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 6.8e-34 147.9 173 57.2
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.2e-33 147.1 168 54.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 2.6e-33 146.0 166 53.6
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 4.4e-33 145.2 164 52.4
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 4.4e-33 145.2 165 55.8
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.7e-32 143.3 164 53.7
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 6.4e-32 141.4 155 56.1
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.9e-31 139.8 165 55.2
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.9e-31 139.8 164 53.7
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 3.2e-31 139.0 164 53.7
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 4.1e-31 138.7 164 53.7
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 5.4e-31 138.3 162 56.2
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 7.0e-31 137.9 143 55.9
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 9.2e-31 137.5 167 52.1
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 9.2e-31 137.5 164 53.0
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.1e-30 136.3 164 52.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 2.1e-30 136.3 164 53.7
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 2.1e-30 136.3 164 53.0
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.7e-30 136.0 164 52.4
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 3.5e-30 135.6 157 54.1
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 3.5e-30 135.6 165 53.3
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 3.5e-30 135.6 110 69.1
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 4.6e-30 135.2 166 53.0
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 7.8e-30 134.4 162 50.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.0e-29 134.0 164 51.8
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.3e-29 133.7 165 52.7
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.3e-29 133.7 165 52.7
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.7e-29 133.3 165 52.7
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.7e-29 133.3 154 53.2
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 1.7e-29 133.3 152 53.9
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 3.0e-29 132.5 167 50.9
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 3.9e-29 132.1 166 54.2
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 3.9e-29 132.1 110 70.0
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 3.9e-29 132.1 164 51.2
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.9e-29 132.1 136 55.9
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 5.0e-29 131.7 165 52.1
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.0e-29 131.7 153 53.6
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 6.6e-29 131.3 165 52.1
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 6.6e-29 131.3 165 52.1
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 1.1e-28 130.6 135 57.0
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.9e-28 129.8 163 50.9
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 3.3e-28 129.0 165 51.5
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 3.3e-28 129.0 166 53.6
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 4.3e-28 128.6 170 51.8
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 7.3e-28 127.9 152 53.3
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 9.5e-28 127.5 165 49.7
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 9.5e-28 127.5 165 49.7
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.2e-27 127.1 170 51.8
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.6e-27 126.7 139 52.5
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.6e-27 126.7 164 47.6
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 6.2e-27 124.8 152 52.6
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 6.2e-27 124.8 128 54.7
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.1e-26 124.0 135 54.8
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.4e-26 123.6 164 47.6
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.4e-26 123.6 193 46.1
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.8e-26 123.2 164 47.0
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.8e-26 123.2 117 61.5
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 3.1e-26 122.5 163 48.5
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 4.0e-26 122.1 166 52.4
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 6.8e-26 121.3 159 47.2
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 8.9e-26 120.9 166 51.2
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.5e-25 120.2 169 48.5
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.5e-25 120.2 137 56.9
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.6e-25 119.4 153 46.4
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.6e-25 119.4 203 42.9
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.4e-25 118.6 170 47.6
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 5.8e-25 118.2 164 46.3
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 9.9e-25 117.5 166 48.8
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.3e-24 117.1 169 46.7
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.7e-24 116.7 146 50.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 3.7e-24 115.5 158 51.3
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.2e-22 110.5 165 47.9
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.6e-22 110.2 137 51.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 4.6e-22 108.6 164 47.0
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 7.8e-22 107.8 128 51.6
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 1.7e-21 106.7 153 46.4
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 2.3e-21 106.3 174 45.4
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 2.3e-21 106.3 126 51.6
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.9e-21 105.5 100 56.0
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 8.6e-21 104.4 118 50.8
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 8.6e-21 104.4 165 42.4
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.5e-20 103.6 132 50.0
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.5e-20 103.6 138 50.0
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 2.5e-20 102.8 172 43.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 4.3e-20 102.1 166 41.6
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 7.3e-20 101.3 137 46.7
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.2e-19 100.5 153 47.1
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 4.7e-19 98.6 101 52.5
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 6.2e-19 98.2 98 59.2
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 5.8e-17 91.7 165 41.8
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 3.8e-16 89.0 165 38.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 3.8e-16 89.0 165 38.2
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 4.9e-16 88.6 142 43.0
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 6.4e-16 88.2 101 56.4
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 6.4e-16 88.2 168 36.9
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 1.1e-15 87.4 96 52.1
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 4.2e-15 85.5 123 46.3
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 1.2e-14 84.0 85 55.3
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.6e-14 83.6 161 39.8
Ca_18661_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.1e-14 83.2 44 100.0
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 3.0e-13 79.3 109 47.7
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 3.0e-13 79.3 109 47.7
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 6.6e-13 78.2 118 44.9
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.5e-12 76.3 97 45.4
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 3.3e-12 75.9 111 44.1
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 4.3e-12 75.5 108 47.2
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.6e-11 73.6 77 51.9
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.8e-11 72.8 75 53.3
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.4e-10 70.5 86 47.7
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.4e-10 69.7 103 40.8
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 4.0e-10 68.9 146 36.3
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 4.0e-10 68.9 148 35.1
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.7e-08 63.5 59 55.9
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 2.2e-08 63.2 110 33.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 8.4e-08 61.2 110 32.7
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 3.5e-06 55.8 74 39.2


User provided reference genes

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