Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30311_v3 Cicer arietinum L. HOM05D003242 ORTHO05D003593 8.2e-111 403.7 195 100.0
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 6.1e-90 334.3 195 82.6
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 1.6e-85 319.7 197 80.7
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 5.7e-80 301.2 195 74.4
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 6.3e-79 297.7 195 74.4
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 3.1e-78 295.4 195 73.8
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.3e-76 290.0 195 72.8
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 4.2e-75 285.0 195 71.3
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 9.5e-75 283.9 195 72.3
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 5.6e-67 258.1 195 67.7
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 2.4e-62 242.7 195 63.6
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 2.0e-61 239.6 197 65.0
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 3.5e-61 238.8 191 62.3
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 6.6e-60 234.6 196 64.3
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 2.5e-59 232.6 183 66.1
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.4e-57 226.9 194 59.3
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 2.2e-55 219.5 188 60.6
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 2.8e-50 202.6 187 52.9
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 3.1e-49 199.1 185 54.6
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 3.1e-49 199.1 122 78.7
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 6.8e-49 198.0 185 56.2
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.6e-48 196.1 189 51.3
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 4.4e-48 195.3 185 53.5
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 1.3e-47 193.7 188 51.1
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 2.2e-47 193.0 187 49.2
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 6.4e-47 191.4 174 53.4
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-46 190.7 187 50.3
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 9.2e-46 187.6 186 51.1
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 2.5e-43 179.5 187 48.1
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 5.6e-43 178.3 178 47.8
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 3.1e-41 172.6 176 46.6
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 4.0e-41 172.2 156 58.3
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 2.9e-39 166.0 156 55.8
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.9e-39 166.0 156 55.8
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.9e-39 166.0 156 55.8
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 7.8e-37 157.9 190 45.3
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 1.7e-36 156.8 121 65.3
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 3.0e-36 156.0 122 60.7
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.9e-35 153.3 155 54.8
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 3.3e-35 152.5 121 58.7
Lalb_Chr04g0257911 Lupinus albus HOM05D003242 ORTHO05D003593 2.1e-34 149.8 119 60.5
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 1.8e-33 146.7 122 56.6
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 2.4e-33 146.4 179 45.3
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 2.4e-33 146.4 180 46.7
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 2.4e-33 146.4 169 44.4
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 4.0e-33 145.6 181 44.8
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.2e-32 144.1 154 51.3
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 2.0e-32 143.3 201 42.8
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 2.6e-32 142.9 121 60.3
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 7.6e-32 141.4 160 45.0
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 9.9e-32 141.0 157 51.0
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 9.9e-32 141.0 180 42.2
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 9.9e-32 141.0 188 43.1
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 9.9e-32 141.0 188 43.1
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 1.3e-31 140.6 180 43.9
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 1.3e-31 140.6 190 43.7
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 2.2e-31 139.8 176 44.9
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 4.9e-31 138.7 188 42.0
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 4.9e-31 138.7 188 42.0
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 6.4e-31 138.3 178 43.8
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 8.4e-31 137.9 178 41.6
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 1.1e-30 137.5 182 44.0
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 2.4e-30 136.3 182 43.4
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 3.2e-30 136.0 156 47.4
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 7.1e-30 134.8 151 46.4
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 2.1e-29 133.3 182 42.9
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 2.1e-29 133.3 178 42.7
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 2.7e-29 132.9 178 42.7
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 6.6e-28 128.3 169 43.2
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 1.5e-27 127.1 165 43.0
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 2.1e-26 123.2 170 41.2
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 3.6e-26 122.5 120 53.3
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 6.2e-26 121.7 165 43.6
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-25 120.6 150 45.3
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.4e-25 119.8 207 38.2
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 1.2e-24 117.5 170 42.4
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 1.5e-24 117.1 121 51.2
Psat3g184400 Pisum sativum HOM05D003242 ORTHO05D003593 2.6e-24 116.3 67 82.1
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 2.6e-24 116.3 196 41.3
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 7.6e-24 114.8 149 41.6
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-23 114.0 188 41.5
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 2.9e-23 112.8 187 36.9
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.9e-23 112.1 188 35.1
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.9e-23 112.1 188 35.1
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.9e-23 112.1 191 35.6
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.1e-22 110.9 171 40.9
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.4e-22 110.5 166 43.4
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 1.9e-22 110.2 189 39.2
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 7.1e-22 108.2 188 35.1
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.1e-21 106.7 179 38.0
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.5e-21 105.9 173 35.3
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.3e-20 103.2 180 35.6
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 2.3e-20 103.2 222 35.1
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 5.1e-20 102.1 187 33.2
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.6e-19 98.6 169 35.5
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 5.6e-19 98.6 169 38.5
Gorai.011G253300 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.8e-18 95.5 169 34.9
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 6.2e-18 95.1 180 34.4
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 8.1e-18 94.7 197 33.0
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 8.1e-18 94.7 224 32.6
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-17 94.0 225 31.6
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.8e-17 93.6 225 31.6
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.4e-17 93.2 237 33.3
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.4e-17 93.2 188 33.0
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-17 92.8 224 32.6
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 3.1e-17 92.8 165 34.5
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.9e-17 91.7 225 31.1
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-16 90.5 152 38.8
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 2.6e-16 89.7 171 34.5
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 3.4e-16 89.4 179 31.3
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.5e-16 89.0 144 37.5
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 4.5e-16 89.0 193 32.1
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.5e-16 89.0 198 30.8
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 7.6e-16 88.2 189 30.2
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 1.3e-15 87.4 67 55.2
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.7e-15 87.0 192 33.3
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.7e-15 87.0 192 33.3
Hma1.2p1_0192F.1_g083590 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 2.2e-15 86.7 194 32.5
CiPaw.09G187700 Carya illinoinensis HOM05D003242 ORTHO05D003593 3.8e-15 85.9 179 31.8
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 8.4e-15 84.7 189 31.2
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 1.1e-14 84.3 183 30.6
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 2.4e-14 83.2 180 33.9
Duzib128G1376 Durio zibethinus HOM05D003242 ORTHO05D003593 5.5e-14 82.0 189 29.1
Glyma.18G286900 Glycine max HOM05D003242 ORTHO05D003593 5.5e-14 82.0 46 82.6
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.1e-14 81.6 143 38.5
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 1.2e-13 80.9 68 52.9
Dinv35647 Davidia involucrata HOM05D003242 ORTHO05D003593 1.2e-13 80.9 186 33.3
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.2e-13 80.9 152 35.5
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.2e-13 80.9 194 32.0
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-13 80.5 144 34.0
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.6e-13 80.5 144 34.0
COL.COLO4_14873 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.5e-13 79.3 195 32.3
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 3.5e-13 79.3 178 31.5
COL.COLO4_14872 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.9e-13 78.2 180 31.1
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 7.9e-13 78.2 187 29.9
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 1.0e-12 77.8 206 30.1
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 1.3e-12 77.4 186 28.5
Rhsim04G0153700 Rhododendron simsii HOM05D003242 ORTHO05D003593 3.9e-12 75.9 191 31.9
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 8.7e-12 74.7 189 30.7
Cc06_g03080 Coffea canephora HOM05D003242 ORTHO05D003593 1.1e-11 74.3 181 30.9
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 1.9e-11 73.6 189 30.7
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 1.9e-11 73.6 179 29.6
Actinidia19757 Actinidia chinensis HOM05D003242 ORTHO05D003593 2.5e-11 73.2 189 29.1
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 3.3e-11 72.8 189 29.6
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 1.3e-10 70.9 149 29.5
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 1.3e-10 70.9 188 29.8
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-10 70.5 159 34.0
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.6e-10 70.5 92 42.4
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.8e-10 68.9 195 31.3
Actinidia13120 Actinidia chinensis HOM05D003242 ORTHO05D003593 8.2e-10 68.2 119 36.1
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 8.2e-10 68.2 104 36.5
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-09 67.4 114 41.2
RcHm_v2.0_Chr3g0467581 Rosa chinensis HOM05D003242 ORTHO05D003593 1.8e-09 67.0 181 30.9
Lj3A972T46 Lonicera japonica HOM05D003242 ORTHO05D003593 3.1e-09 66.2 202 26.7
Gohir.D05G300333 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.0e-09 65.9 109 38.5
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 4.0e-09 65.9 220 31.8
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.2e-08 64.3 185 27.0
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 5.8e-08 62.0 68 50.0
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-07 60.8 103 33.0
vmacro08675 Vaccinium macrocarpon HOM05D003242 ORTHO05D003593 1.3e-07 60.8 191 27.7
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 4.9e-07 58.9 104 34.6
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 8.4e-07 58.2 82 41.5


User provided reference genes

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