Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.5e-192 674.5 350 100.0
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.5e-192 674.5 350 100.0
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.2e-167 592.4 356 87.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 3.6e-165 585.1 355 87.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 5.5e-150 534.6 355 80.8
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.6e-149 531.9 357 79.8
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 4.0e-148 528.5 355 80.3
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 3.1e-145 518.8 365 76.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.7e-143 513.1 365 75.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.2e-141 506.9 355 76.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.8e-140 503.1 357 76.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 7.5e-139 497.7 350 76.3
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 6.3e-138 494.6 305 84.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.1e-134 483.8 335 74.3
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.6e-131 472.6 314 78.3
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.6e-131 472.6 326 73.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.4e-131 472.2 318 77.7
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.7e-130 469.9 361 71.2
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 2.2e-130 469.5 357 70.6
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.7e-130 468.8 336 72.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.7e-130 468.8 367 69.2
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.7e-130 468.8 332 73.5
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.4e-129 466.8 330 72.1
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.1e-129 465.7 316 77.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.0e-128 463.0 330 72.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.0e-128 463.0 344 71.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.7e-128 462.6 319 75.5
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.5e-128 461.8 318 75.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 5.9e-128 461.5 342 72.2
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 7.8e-128 461.1 337 71.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.0e-127 460.7 312 76.9
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.3e-127 459.5 333 72.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.9e-127 459.1 347 72.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 3.8e-127 458.8 344 71.8
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.8e-127 458.8 318 74.5
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 5.0e-127 458.4 305 77.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 8.6e-127 457.6 335 72.2
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 8.6e-127 457.6 347 71.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.1e-126 457.2 316 75.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.5e-126 456.8 326 72.7
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.5e-126 456.8 317 74.1
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 3.3e-126 455.7 317 74.4
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 4.3e-126 455.3 317 74.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 5.6e-126 454.9 347 71.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 5.6e-126 454.9 329 71.7
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 7.3e-126 454.5 338 71.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.1e-125 453.0 313 74.1
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 4.7e-125 451.8 360 69.4
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 6.1e-125 451.4 326 71.5
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 8.0e-125 451.1 303 77.2
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.0e-125 451.1 311 76.5
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 8.0e-125 451.1 340 71.2
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.0e-124 450.7 334 71.9
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.8e-124 449.9 313 73.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.3e-124 449.5 325 72.9
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.3e-124 449.5 311 76.2
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.3e-124 449.5 315 73.3
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 3.0e-124 449.1 318 73.6
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.9e-124 447.6 334 73.1
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 8.9e-124 447.6 336 71.1
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.5e-123 446.8 317 73.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.5e-123 446.8 331 70.4
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.5e-123 446.8 341 70.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.6e-123 446.0 299 77.3
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.6e-123 446.0 334 70.7
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.6e-123 446.0 332 72.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 3.4e-123 445.7 360 66.7
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 3.4e-123 445.7 309 74.8
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 7.5e-123 444.5 336 70.8
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.5e-123 444.5 316 74.4
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 9.8e-123 444.1 294 76.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 9.8e-123 444.1 360 66.7
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 9.8e-123 444.1 315 75.6
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.8e-123 444.1 315 75.6
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.8e-123 444.1 315 75.6
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.3e-122 443.7 349 67.6
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.7e-122 443.4 341 70.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.2e-122 443.0 359 68.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 357 66.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.7e-122 442.2 308 76.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 4.9e-122 441.8 362 65.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.4e-121 440.3 330 70.3
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.4e-121 440.3 265 82.6
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.4e-121 440.3 265 82.6
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.9e-121 439.9 311 72.7
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.4e-121 439.5 266 83.1
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.1e-121 438.7 327 70.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 5.4e-121 438.3 312 73.1
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 7.0e-121 438.0 286 78.7
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-120 437.2 298 74.8
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.0e-120 436.4 317 71.6
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.7e-120 436.0 312 71.8
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.5e-120 435.6 260 83.8
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.5e-120 435.6 281 79.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.5e-120 435.6 286 78.7
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 4.6e-120 435.3 348 68.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.6e-120 435.3 303 73.9
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.0e-119 434.1 317 71.9
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.0e-119 434.1 296 76.0
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.0e-119 434.1 360 65.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.7e-119 433.3 288 75.7
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-119 433.3 303 73.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.3e-119 433.0 319 70.5
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 3.0e-119 432.6 360 65.0
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-118 429.9 319 69.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-118 429.9 360 64.7
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.9e-118 429.9 313 70.3
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 2.5e-118 429.5 360 64.4
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-118 429.5 361 64.8
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.5e-118 429.5 361 64.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.5e-118 429.5 313 70.6
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 4.3e-118 428.7 345 67.2
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 7.3e-118 427.9 332 67.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 9.5e-118 427.6 322 70.5
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.2e-117 427.2 341 68.0
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 4.0e-116 422.2 246 86.2
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 8.9e-116 421.0 254 81.9
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.0e-115 419.9 326 69.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 8.3e-114 414.5 407 58.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.4e-113 413.7 265 80.0
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 9.2e-113 411.0 279 75.3
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.9e-111 405.6 305 69.8
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 5.0e-111 405.2 331 65.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.0e-111 405.2 375 60.3
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.5e-110 403.7 339 65.5
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.5e-107 393.7 225 86.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 9.9e-107 391.0 275 72.4
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.9e-106 388.7 251 76.1
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.1e-105 387.5 361 60.9
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.4e-105 387.1 260 74.6
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 4.1e-105 385.6 318 65.4
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 9.2e-105 384.4 356 62.4
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.7e-104 382.9 246 77.2
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 6.0e-104 381.7 259 74.9
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.5e-102 376.3 246 76.0
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 4.3e-102 375.6 276 69.2
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.7e-95 353.6 251 67.3
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 2.0e-91 340.1 252 71.0
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.3e-90 337.4 248 69.8
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.3e-90 337.4 249 70.3
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.6e-88 330.5 286 60.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.4e-62 241.9 209 60.3
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-60 236.5 155 76.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.5e-59 234.2 155 75.5
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 9.4e-57 224.9 170 67.1
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 9.4e-57 224.9 170 67.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 3.9e-47 193.0 108 90.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.4e-36 157.1 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.1e-36 156.4 99 79.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 6.1e-32 142.5 128 58.6
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.1e-32 142.5 117 62.4
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 3.6e-24 116.7 102 62.7
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.1e-20 103.2 61 85.2
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-19 100.5 64 79.7


User provided reference genes

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