Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30206_v3 Cicer arietinum L. HOM05D000832 ORTHO05D015072 8.8e-80 300.4 176 100.0
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 3.2e-74 282.0 167 100.0
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 2.1e-49 199.5 155 71.6
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 8.6e-43 177.6 155 76.8
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 2.5e-42 176.0 157 77.1
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 8.9e-40 167.5 156 66.0
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.5e-34 149.4 160 57.5
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 9.5e-34 147.5 157 60.5
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 8.1e-33 144.4 160 55.6
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 1.2e-31 140.6 160 55.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 9.9e-31 137.5 162 54.3
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 3.8e-30 135.6 155 55.5
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 1.9e-29 133.3 155 54.8
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 3.2e-29 132.5 159 55.3
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 5.4e-29 131.7 155 52.9
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 2.1e-28 129.8 155 54.8
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 1.3e-27 127.1 155 51.6
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 1.7e-27 126.7 123 65.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 3.0e-27 125.9 121 63.6
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 3.6e-25 119.0 122 60.7
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 5.8e-23 111.7 163 49.1
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 1.3e-22 110.5 168 47.6
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 2.2e-22 109.8 163 46.0
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.4e-21 107.1 161 47.2
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 5.4e-21 105.1 161 44.1
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 1.6e-20 103.6 124 54.0
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 2.7e-20 102.8 166 45.8
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 6.0e-20 101.7 166 44.6
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 7.8e-20 101.3 121 52.9
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 7.8e-20 101.3 169 46.2
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 7.8e-20 101.3 161 46.6
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 2.3e-19 99.8 163 42.9
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 3.0e-19 99.4 161 46.0
Glyma.02G130832 Glycine max HOM05D000832 ORTHO05D015072 3.0e-19 99.4 140 49.3
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 5.1e-19 98.6 123 49.6
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 5.1e-19 98.6 127 52.8
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 5.1e-19 98.6 129 49.6
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 5.1e-19 98.6 165 44.2
VMungo0464G0422 Vigna mungo HOM05D000832 ORTHO05D020986 5.1e-19 98.6 81 74.1
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 6.6e-19 98.2 164 43.9
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 6.6e-19 98.2 173 43.4
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 1.1e-18 97.4 158 45.6
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.1e-18 97.4 171 43.3
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 1.5e-18 97.1 162 43.2
Glyma.02G117816 Glycine max HOM05D000832 ORTHO05D015072 1.5e-18 97.1 140 48.6
Glyma.02G130880 Glycine max HOM05D000832 ORTHO05D015072 1.5e-18 97.1 140 48.6
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 1.5e-18 97.1 164 43.9
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 1.9e-18 96.7 165 43.6
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.5e-18 96.3 161 45.3
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 3.3e-18 95.9 161 45.3
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 3.3e-18 95.9 161 45.3
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 3.3e-18 95.9 168 41.1
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 4.3e-18 95.5 161 44.1
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 4.3e-18 95.5 163 42.3
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 4.3e-18 95.5 161 45.3
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.3e-18 95.5 159 39.6
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 5.6e-18 95.1 163 41.1
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 5.6e-18 95.1 124 50.0
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 5.6e-18 95.1 124 51.6
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 7.3e-18 94.7 115 56.5
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.3e-17 94.0 165 41.2
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 1.3e-17 94.0 122 49.2
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 1.6e-17 93.6 152 46.1
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 2.8e-17 92.8 112 50.0
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.8e-17 92.8 159 39.0
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 2.8e-17 92.8 163 41.1
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 4.8e-17 92.0 165 43.0
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 8.1e-17 91.3 166 41.6
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.4e-16 90.5 129 47.3
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.4e-16 90.5 160 41.2
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 4.0e-16 89.0 165 42.4
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 4.0e-16 89.0 164 43.3
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 4.0e-16 89.0 165 43.0
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 9.0e-16 87.8 161 39.1
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.5e-15 87.0 161 39.1
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 1.5e-15 87.0 163 40.5
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 2.6e-15 86.3 130 46.2
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 2.6e-15 86.3 172 41.3
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 2.6e-15 86.3 161 37.9
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 3.4e-15 85.9 161 38.5
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 4.5e-15 85.5 164 39.6
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 4.5e-15 85.5 160 40.0
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 9.9e-15 84.3 178 38.2
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 1.7e-14 83.6 163 38.0
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 1.7e-14 83.6 165 39.4
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 1.7e-14 83.6 121 43.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 1.7e-14 83.6 161 38.5
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 2.9e-14 82.8 163 38.7
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 2.9e-14 82.8 163 38.7
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 2.9e-14 82.8 163 38.7
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 2.9e-14 82.8 163 38.7
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 4.9e-14 82.0 163 38.0
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 4.9e-14 82.0 164 45.1
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 8.4e-14 81.3 164 34.1
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 8.4e-14 81.3 181 38.7
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 8.4e-14 81.3 161 39.8
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 1.1e-13 80.9 123 47.2
unitig_27.g25234 Utricularia gibba HOM05D000832 ORTHO05D000982 1.4e-13 80.5 166 38.6
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.9e-13 80.1 123 45.5
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 3.2e-13 79.3 163 39.3
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 3.2e-13 79.3 114 48.2
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 4.2e-13 79.0 163 36.8
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 4.2e-13 79.0 166 42.8
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 4.2e-13 79.0 161 37.9
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 7.1e-13 78.2 120 41.7
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 1.2e-12 77.4 163 36.2
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 2.1e-12 76.6 164 38.4
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 3.5e-12 75.9 127 42.5
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 3.5e-12 75.9 124 39.5
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 4.6e-12 75.5 127 42.5
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 6.0e-12 75.1 126 42.9
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 7.9e-12 74.7 163 35.6
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 1.0e-11 74.3 122 42.6
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 1.3e-11 73.9 165 37.0
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 1.8e-11 73.6 122 41.8
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.3e-11 73.2 84 57.1
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 3.9e-11 72.4 185 34.6
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 3.9e-11 72.4 127 42.5
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 3.9e-11 72.4 127 42.5
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 5.1e-11 72.0 126 43.7
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 1.5e-10 70.5 124 41.9
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 2.5e-10 69.7 115 39.1
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 3.3e-10 69.3 112 41.1
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 3.3e-10 69.3 73 57.5
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 7.4e-10 68.2 44 68.2
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 7.4e-10 68.2 110 39.1
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 3.7e-09 65.9 123 45.5
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 6.2e-09 65.1 163 35.0
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 2.4e-08 63.2 173 33.5
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 5.3e-08 62.0 125 40.0
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 1.5e-07 60.5 124 38.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.5e-07 60.5 124 38.7
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.5e-07 58.9 125 38.4
Psat3g193920 Pisum sativum HOM05D000832 ORTHO05D013522 4.5e-07 58.9 29 89.7
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 7.6e-07 58.2 78 52.6
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.3e-06 57.4 124 37.9
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.7e-06 57.0 121 37.2
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 2.2e-06 56.6 124 38.7


User provided reference genes

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