Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 2613.6 1356 100.0
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 2594.7 1352 99.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1977.6 1493 73.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1976.8 1505 72.0
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1959.1 1582 69.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1718.4 1563 61.4
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1688.7 1398 66.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1681.0 1510 61.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1663.3 1510 60.9
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1632.8 1565 59.9
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1630.2 1486 61.0
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1622.8 1539 59.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1600.9 1561 59.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1338.2 1422 53.7
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1282.7 1506 49.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1266.9 1508 50.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1261.1 1521 48.5
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1248.8 1396 53.2
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1243.4 1465 49.6
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1241.5 1535 47.9
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 0.0e+00 1234.9 2356 38.5
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1233.8 1457 51.1
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1222.2 1517 48.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1213.7 1432 49.1
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1207.6 1399 50.5
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1204.1 1534 46.9
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1198.0 1389 49.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1197.2 1424 51.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1194.5 1387 50.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1186.0 1553 47.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1177.5 1394 49.1
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1402 48.6
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1153.3 1398 50.4
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1152.9 1403 49.5
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1141.7 1388 47.7
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1135.6 1408 49.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1135.6 1405 48.3
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1131.3 1373 50.0
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1129.4 1414 47.0
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1125.9 1457 47.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1119.8 1408 47.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1117.4 1373 49.7
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1117.1 1454 48.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1110.5 1380 46.7
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1100.1 1448 45.0
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1097.0 1528 43.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1097.0 1363 48.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1094.0 1392 46.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1092.0 1493 44.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1087.4 1421 46.5
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1087.4 1400 48.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1087.0 1392 46.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1076.6 1803 40.7
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 9.3e-312 1074.3 1369 48.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 9.3e-312 1074.3 1533 42.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.6e-309 1066.6 1373 47.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 1.7e-308 1063.1 1354 47.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 3.8e-308 1062.0 1369 47.6
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.5e-307 1060.1 1385 47.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.5e-307 1060.1 1396 45.3
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.6e-304 1049.3 1390 46.1
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 5.8e-304 1048.1 1390 46.0
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 7.5e-304 1047.7 1400 45.4
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1411 46.4
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1452 45.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 7.0e-302 1041.2 1402 46.6
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 9.2e-302 1040.8 1463 44.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.3e-300 1036.2 1360 45.4
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 5.0e-300 1035.0 1385 46.6
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 8.3e-295 1017.7 1402 45.9
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 2.4e-294 1016.1 1440 43.7
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.3e-287 993.8 1515 42.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.2e-287 993.0 1393 44.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 2.1e-285 986.5 1368 45.0
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 2.5e-283 979.5 1500 42.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 4.7e-274 948.7 1421 43.6
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.5e-272 943.7 1366 43.0
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.6e-272 943.0 1471 43.3
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.4e-272 942.2 931 55.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.4e-271 937.9 1415 44.0
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 9.3e-270 934.5 1360 42.5
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.5e-267 927.2 1361 42.3
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.7e-258 896.0 1357 43.2
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.7e-255 887.1 1030 50.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.4e-254 884.0 1375 39.7
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.0e-252 876.3 737 62.7
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 7.4e-251 871.7 1206 45.6
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 1.5e-243 847.4 988 47.2
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.4e-232 809.7 1300 41.2
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.1e-230 804.7 1435 38.7
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.1e-227 794.7 1361 40.3
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.6e-211 740.3 1327 38.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.9e-206 724.2 1156 40.1
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 8.0e-205 718.8 795 51.6
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.8e-202 709.5 1382 34.4
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.6e-167 592.4 1181 37.3
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 3.3e-166 590.5 1482 32.7
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.7e-165 586.6 699 46.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.4e-164 584.3 547 56.1
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 5.2e-164 583.2 1346 34.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 6.6e-151 539.7 839 43.5
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.8e-147 526.6 887 39.3
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 6.9e-132 476.5 1339 29.3
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.2e-125 454.9 436 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.2e-113 414.5 1416 27.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.0e-110 405.2 549 44.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 9.4e-105 386.3 1543 25.9
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-101 375.2 474 43.5
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 7.7e-99 366.7 443 48.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.2e-98 365.2 544 39.9
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.2e-94 352.8 349 58.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 7.0e-92 343.6 1452 25.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.7e-90 339.0 504 48.0
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 5.4e-84 317.4 323 57.3
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.2e-76 291.6 290 50.3
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.1e-68 264.6 331 46.8
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.3e-65 254.6 230 60.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-60 238.8 244 55.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.0e-55 221.5 767 27.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-50 206.1 162 66.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-48 199.9 268 42.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 6.9e-47 194.1 441 37.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.3e-45 189.9 158 64.6
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.7e-42 179.5 127 71.7
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-41 173.7 659 26.4
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-37 162.5 233 37.8
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.2e-36 158.7 162 55.6
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.2e-29 136.0 207 40.6
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.1e-28 133.7 401 26.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-26 126.7 710 24.2
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.7e-26 124.0 105 61.9
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.2e-22 113.6 102 58.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.7e-21 109.8 180 39.4
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.8e-21 108.6 352 27.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.6e-19 103.2 74 64.9
Psat4g190880 Pisum sativum HOM05D001399 ORTHO05D006361 5.9e-14 84.7 76 60.5
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.9e-12 79.7 79 58.2
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.5e-12 79.3 235 28.5
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-10 73.2 75 54.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 5.1e-10 71.6 70 55.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.1e-09 70.5 90 46.7
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.5e-09 69.3 231 29.0
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 2.5e-09 69.3 138 33.3
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.8e-07 63.2 48 62.5


User provided reference genes

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