Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 0.0e+00 1140.2 633 100.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 0.0e+00 1140.2 633 100.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 7.6e-275 950.3 635 82.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 5.5e-273 944.1 638 82.6
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.8e-255 885.9 636 78.8
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 7.0e-236 820.8 629 72.2
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 8.5e-234 813.9 643 69.2
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.5e-233 813.1 643 72.2
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.3e-229 797.7 631 69.4
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.4e-228 795.8 631 69.1
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.6e-227 793.1 642 68.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.2e-221 772.7 634 66.9
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.4e-199 700.3 630 59.4
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-197 692.6 622 64.0
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.8e-191 671.4 630 60.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.2e-189 666.4 638 57.1
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.5e-187 659.1 642 56.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 4.6e-187 658.7 631 57.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.7e-186 656.8 633 58.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-183 647.1 637 55.9
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-183 647.1 637 55.9
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 5.8e-182 641.7 640 55.5
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.9e-180 636.7 642 54.0
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.2e-180 635.6 642 53.9
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 7.8e-179 631.3 642 53.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.0e-178 629.4 642 53.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.1e-178 628.6 643 54.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 6.6e-178 628.2 641 54.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.9e-177 626.7 654 54.0
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.9e-177 626.7 638 54.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.5e-177 626.3 641 53.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.5e-177 626.3 638 53.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.5e-177 626.3 643 55.2
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.6e-177 625.2 654 53.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.6e-176 623.6 639 54.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.6e-176 623.6 650 53.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-176 623.2 654 52.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.1e-176 621.3 639 54.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.8e-175 620.2 656 52.9
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.4e-175 619.8 631 55.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-175 619.8 654 53.1
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.4e-175 619.8 646 53.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.3e-175 618.6 639 54.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-175 618.2 654 52.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-175 618.2 654 52.6
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.8e-174 615.1 656 52.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 9.9e-174 614.4 645 53.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.9e-173 612.1 654 52.3
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.1e-169 600.9 646 53.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.5e-169 600.5 646 52.9
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.8e-168 596.3 646 51.4
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.4e-167 593.2 648 52.0
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.9e-167 591.7 648 52.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 4.5e-166 589.0 636 51.9
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 4.2e-164 582.4 636 50.0
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 9.3e-164 581.3 646 52.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.7e-163 579.7 646 51.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 7.9e-163 578.2 636 50.5
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.5e-161 573.9 644 50.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 5.6e-161 572.0 659 52.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.4e-161 571.6 641 50.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 4.8e-160 568.9 644 51.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.1e-159 567.8 639 49.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.5e-158 563.9 656 49.5
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.7e-157 560.5 639 50.7
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 8.4e-157 558.1 660 48.9
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.5e-156 555.4 636 48.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.2e-155 554.3 639 50.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 4.6e-155 552.4 642 49.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 6.0e-155 552.0 639 49.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.8e-154 550.4 638 49.1
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.3e-154 550.1 654 48.5
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-153 547.0 643 48.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.7e-153 545.4 642 47.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.7e-152 542.7 653 48.7
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.8e-152 542.3 411 70.3
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.1e-151 539.7 638 48.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-151 539.3 638 49.2
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.9e-151 538.5 637 48.7
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 9.0e-151 538.1 637 48.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-150 537.7 637 48.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 3.4e-150 536.2 650 47.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 5.9e-150 535.4 642 48.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.8e-149 532.7 638 47.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.4e-148 530.8 639 48.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.1e-146 522.3 650 48.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-144 515.4 605 49.4
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.5e-142 510.8 646 47.1
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.4e-142 509.6 640 45.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.2e-140 503.1 643 47.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 4.6e-139 499.2 646 45.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.3e-137 493.0 631 45.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.4e-135 487.6 582 48.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.8e-135 487.3 333 77.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.7e-133 480.7 640 45.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 6.5e-133 478.8 426 60.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 4.2e-132 476.1 657 45.4
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 5.5e-132 475.7 566 49.6
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.3e-128 464.5 635 43.9
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.7e-128 464.2 607 46.5
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.5e-126 456.4 450 56.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 7.7e-126 455.3 636 44.2
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.4e-124 448.4 450 55.6
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 7.5e-121 438.7 638 42.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.7e-118 430.3 657 39.1
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 7.7e-118 428.7 412 57.5
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.2e-117 427.2 649 40.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.5e-116 424.5 638 40.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.3e-114 417.2 638 39.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 7.0e-111 405.6 659 39.8
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-101 373.6 634 39.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.5e-100 371.3 643 40.1
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 9.5e-100 368.6 508 41.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.3e-92 342.4 346 56.6
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-91 341.7 633 37.9
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 3.6e-91 340.1 631 37.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 8.0e-91 339.0 631 37.9
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 4.4e-89 333.2 634 37.9
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 7.5e-89 332.4 368 58.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 9.8e-89 332.0 631 36.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-88 329.3 623 37.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.7e-85 321.2 639 34.7
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-82 311.2 633 35.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.5e-78 297.0 406 43.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.5e-76 290.8 616 35.9
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.5e-73 281.6 623 36.1
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.6e-73 280.8 648 30.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 6.4e-72 276.2 418 41.1
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.3e-68 263.5 623 35.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.2e-66 256.5 622 35.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-62 244.6 427 38.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 9.0e-58 229.2 608 32.9
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-50 204.5 427 34.4
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.7e-48 198.4 243 49.0
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.0e-45 187.6 166 61.4
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.8e-43 180.3 541 29.9
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.4e-41 174.1 673 25.9
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-39 169.1 175 54.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-35 155.6 132 64.4
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 3.7e-35 154.1 114 70.2
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-34 152.5 120 66.7
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-30 138.7 142 50.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 7.9e-30 136.3 116 62.9
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-27 126.7 117 58.1
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.2e-27 126.3 85 71.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 6.9e-26 123.2 96 67.7
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-23 114.4 141 48.9
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 9.4e-23 112.8 94 62.8
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-22 112.5 90 61.1
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-22 110.5 359 30.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 4.6e-22 110.5 71 73.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-21 107.1 90 60.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 8.8e-21 106.3 344 25.9
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-19 100.9 90 57.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 2.4e-18 98.2 120 50.0
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 9.1e-18 96.3 51 90.2
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.4e-15 89.0 146 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.9e-15 88.6 150 36.7
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.5e-15 88.2 129 41.1
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.5e-15 88.2 112 45.5
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 8.8e-13 79.7 67 50.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 7.4e-12 76.6 215 32.6
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 7.4e-12 76.6 215 32.6
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-11 74.7 215 32.1
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 9.1e-10 69.7 96 41.7
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-09 68.9 48 64.6
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-08 63.9 80 45.0
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.5e-08 63.5 61 49.2
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 9.4e-07 59.7 61 47.5
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 4.7e-06 57.4 57 54.4
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-06 57.4 68 54.4


User provided reference genes

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