Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 0.0e+00 1679.5 802 100.0
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 0.0e+00 1679.5 802 100.0
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1431.8 807 85.4
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1408.7 811 84.3
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1402.9 814 83.4
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1341.6 823 77.5
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1333.2 818 77.8
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1288.5 818 74.8
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1214.1 809 71.2
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1199.9 822 70.8
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1193.7 822 70.6
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1180.2 722 77.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1175.2 819 69.6
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1119.0 816 66.9
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1076.6 820 63.0
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 5.5e-312 1074.3 819 62.6
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 6.6e-311 1070.5 820 62.7
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 8.2e-311 1070.1 820 62.6
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 3.9e-308 1061.2 840 61.2
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 3.9e-308 1061.2 820 62.4
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 2.5e-307 1058.5 823 61.8
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 1.2e-306 1056.2 813 62.0
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 4.0e-305 1051.2 819 61.5
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 2.2e-303 1045.4 817 60.8
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 6.4e-303 1043.9 823 60.8
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.1e-302 1043.1 819 61.2
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.1e-301 1038.9 819 60.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 8.7e-300 1033.5 820 60.4
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.5e-299 1032.7 819 60.7
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 3.3e-299 1031.6 819 60.3
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 5.6e-299 1030.8 801 61.9
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 4.8e-298 1027.7 820 60.1
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-297 1026.5 801 61.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 5.3e-297 1024.2 810 61.2
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 7.6e-296 1020.4 822 59.2
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.7e-295 1019.2 814 59.8
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.2e-294 1015.0 815 59.6
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 4.5e-288 994.6 818 57.5
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 2.3e-284 982.2 859 55.9
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.9e-283 979.2 819 57.1
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 2.5e-283 978.8 787 60.4
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.6e-283 976.9 821 55.4
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 1.6e-282 976.1 820 55.4
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 4.8e-282 974.5 815 56.6
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 7.6e-280 967.2 787 58.7
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 5.5e-278 961.1 821 57.0
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 7.1e-278 960.7 819 55.8
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 1.3e-276 956.4 804 58.5
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 2.3e-276 955.7 806 56.9
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 3.0e-276 955.3 824 56.1
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 1.6e-274 949.5 725 60.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 2.8e-274 948.7 821 56.3
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 1.9e-270 936.0 779 58.7
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 9.4e-270 933.7 809 55.3
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 2.1e-269 932.6 819 56.4
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 3.6e-269 931.8 816 55.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 6.1e-269 931.0 813 55.6
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 2.5e-267 925.6 817 54.0
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 5.7e-267 924.5 716 62.4
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 2.8e-266 922.2 820 54.9
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 1.4e-265 919.8 801 55.4
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.0e-264 916.0 825 54.8
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 4.5e-264 914.8 821 53.7
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.2e-261 906.7 795 56.4
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 2.0e-259 899.4 813 54.1
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 1.8e-257 892.9 786 55.1
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 4.2e-254 881.7 809 53.6
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.4e-252 876.7 818 52.1
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.5e-251 873.2 803 53.1
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.3e-251 872.1 746 56.6
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.3e-250 870.2 811 53.1
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 1.3e-250 870.2 801 53.4
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 7.0e-249 864.4 818 51.7
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 3.2e-246 855.5 808 50.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 4.2e-246 855.1 747 55.8
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.3e-242 843.6 806 53.2
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 1.1e-241 840.5 790 54.3
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 2.0e-240 836.3 813 49.0
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 4.4e-235 818.5 618 62.3
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.8e-233 813.1 835 48.0
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 9.1e-233 810.8 832 49.9
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 9.5e-230 800.8 806 50.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 9.5e-230 800.8 655 60.5
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 8.9e-228 794.3 806 49.3
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-225 787.3 608 62.0
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 5.0e-223 778.5 826 49.6
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.6e-221 773.5 637 59.5
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.8e-220 770.0 819 49.2
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 2.3e-215 753.1 805 47.3
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 4.7e-197 692.2 444 77.0
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 4.9e-186 655.6 775 47.4
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 2.1e-173 613.6 862 39.3
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.7e-170 604.0 572 49.3
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.4e-169 600.9 453 61.6
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 2.5e-150 537.0 385 68.6
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.2e-149 531.9 433 57.5
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.0e-143 515.0 499 49.9
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.0e-118 431.0 347 61.4
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.6e-118 430.6 435 49.9
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 3.0e-111 407.1 787 32.0
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.2e-104 385.2 278 67.3
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.0e-90 337.4 302 51.0
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.8e-63 248.4 212 57.5
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.7e-51 208.0 171 60.8
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 6.9e-39 166.8 196 41.8
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 2.5e-36 158.3 128 57.8
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.3e-33 147.5 161 45.3
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 7.4e-33 146.7 157 51.0
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 5.9e-30 137.1 108 60.2
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.1e-28 132.9 96 60.4
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-27 129.4 136 47.8
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 2.6e-25 121.7 814 22.1
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.8e-24 117.5 191 38.7
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.1e-23 116.3 150 42.0
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 5.3e-23 114.0 150 40.0
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 6.5e-21 107.1 160 41.2
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.1e-15 86.7 86 51.2
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 9.1e-15 86.7 96 49.0
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.7e-11 75.1 50 68.0
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 8.0e-11 73.6 62 53.2
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.2e-08 65.5 52 59.6
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 9.1e-07 60.1 41 61.0


User provided reference genes

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