Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.7e-175 617.5 310 100.0
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.7e-175 617.5 310 100.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.1e-154 550.1 310 88.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.9e-142 508.8 310 81.9
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 5.1e-139 498.0 302 81.8
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 8.6e-139 497.3 302 81.5
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.5e-138 496.5 281 87.2
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.8e-136 489.6 303 79.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.2e-135 486.9 304 78.6
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.7e-132 475.7 307 77.5
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.4e-122 441.0 308 72.7
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.4e-117 426.0 308 67.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 6.0e-116 421.4 311 66.9
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 5.1e-115 418.3 317 66.9
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 7.4e-114 414.5 314 65.9
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.3e-113 413.7 312 64.7
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.6e-113 413.3 310 66.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.8e-113 412.5 311 67.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 6.2e-113 411.4 311 65.9
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 8.2e-113 411.0 311 67.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.2e-113 411.0 310 65.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 8.2e-113 411.0 308 65.6
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.1e-112 410.6 308 67.2
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 4.0e-112 408.7 311 66.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.3e-112 408.3 308 65.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 5.3e-112 408.3 314 67.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 6.9e-112 407.9 307 67.1
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.2e-111 407.1 309 66.0
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.6e-111 406.0 310 65.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.5e-111 405.2 314 66.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 5.8e-111 404.8 310 64.5
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 7.6e-111 404.4 310 65.2
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.0e-110 404.1 314 65.9
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.0e-110 404.1 318 63.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.2e-110 402.9 319 63.0
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 4.9e-110 401.7 307 66.4
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.5e-109 399.4 310 63.5
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.6e-108 396.7 304 69.7
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.7e-108 396.0 333 61.3
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.5e-108 395.6 312 64.4
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 7.9e-108 394.4 312 62.8
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.0e-107 394.0 315 62.5
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.0e-107 394.0 314 64.3
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.3e-107 393.7 313 62.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-107 393.7 315 62.9
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.9e-107 392.1 310 61.9
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 8.7e-107 391.0 310 63.9
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-106 390.6 309 62.8
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 7.4e-106 387.9 315 62.5
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.6e-105 386.7 307 63.2
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.6e-105 386.7 282 68.1
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.8e-105 386.0 330 60.6
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 3.7e-105 385.6 313 62.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 4.8e-105 385.2 315 62.2
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.8e-105 385.2 309 62.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.8e-105 385.2 302 62.3
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.1e-104 382.5 268 69.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 4.1e-104 382.1 313 62.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.3e-104 381.7 311 62.4
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.3e-102 377.1 313 61.3
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 3.8e-102 375.6 315 61.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.8e-102 375.6 311 62.4
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 5.0e-102 375.2 287 65.5
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 5.0e-102 375.2 280 64.6
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-101 374.0 311 59.8
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.9e-101 373.2 280 66.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 9.3e-101 370.9 302 62.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 9.3e-101 370.9 281 61.6
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.2e-100 370.5 314 61.8
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.6e-100 368.6 310 60.3
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 7.9e-100 367.9 313 59.7
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.3e-99 367.1 280 64.6
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.3e-99 366.3 309 60.2
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 5.1e-99 365.2 280 63.9
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.9e-98 363.2 310 59.4
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.3e-97 360.5 311 60.8
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.2e-97 359.8 311 59.2
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 4.1e-96 355.5 324 57.4
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.9e-94 349.4 274 62.8
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.0e-94 348.6 310 61.0
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 6.5e-94 348.2 322 55.3
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.1e-93 347.4 310 56.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-92 344.0 275 65.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 4.7e-92 342.0 280 62.9
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.3e-91 339.7 240 70.4
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 9.7e-90 334.3 312 56.7
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.2e-89 333.2 315 56.8
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 5.3e-88 328.6 274 60.6
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 6.9e-88 328.2 314 55.7
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.5e-87 327.0 268 62.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.6e-87 326.2 332 53.3
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.4e-87 325.9 315 54.6
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.9e-86 322.8 279 58.4
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 6.5e-86 321.6 314 54.8
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.5e-85 319.7 316 53.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.2e-85 318.9 315 54.0
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 7.2e-85 318.2 315 54.0
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.7e-84 316.2 315 53.3
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.7e-84 316.2 248 61.7
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.6e-84 315.8 313 53.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-84 315.8 313 53.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.6e-84 315.8 315 53.3
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.7e-84 315.5 315 52.7
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 6.1e-84 315.1 221 70.6
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 8.0e-84 314.7 315 53.3
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.0e-83 314.3 313 53.4
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 5.2e-83 312.0 315 52.4
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 5.2e-83 312.0 315 52.4
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.5e-82 310.5 315 53.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-82 309.3 313 53.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.3e-82 309.3 233 67.8
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 5.7e-82 308.5 288 54.9
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 5.7e-82 308.5 313 53.0
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 6.3e-81 305.1 246 64.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.6e-79 299.7 267 58.1
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.3e-78 297.4 283 54.4
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 5.0e-78 295.4 265 58.5
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.7e-76 289.7 306 49.7
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 3.3e-74 282.7 303 49.5
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.7e-73 279.3 276 51.8
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.1e-69 267.7 278 48.6
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.3e-62 243.4 201 61.7
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 7.8e-47 191.8 194 56.2
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.5e-45 187.6 278 40.3
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.2e-44 184.5 107 85.0
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-43 180.6 133 63.2
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.3e-41 174.5 170 56.5
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 4.6e-39 166.0 137 62.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 3.0e-38 163.3 109 69.7
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 5.8e-34 149.1 112 64.3
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 6.9e-11 72.4 248 29.8
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.1e-08 65.1 138 34.1


User provided reference genes

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