Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 3.8e-260 901.0 455 100.0
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 3.5e-253 877.9 455 98.5
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 2.7e-213 745.3 456 81.6
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 4.4e-208 728.0 457 81.2
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 5.8e-200 701.0 455 76.0
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 9.9e-200 700.3 454 75.1
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 3.8e-199 698.4 455 77.1
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 7.1e-198 694.1 456 73.5
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 1.0e-196 690.3 457 74.2
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 1.2e-141 507.3 453 54.5
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 5.2e-140 501.9 455 54.7
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 8.8e-140 501.1 455 54.1
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 1.7e-138 496.9 368 68.5
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 1.1e-137 494.2 455 55.4
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 2.4e-137 493.0 456 55.0
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 9.1e-137 491.1 450 54.2
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 2.2e-135 486.5 471 57.7
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 5.0e-135 485.3 454 52.2
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 1.5e-134 483.8 454 52.0
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 2.7e-133 479.6 458 53.9
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 2.7e-133 479.6 454 52.6
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 6.1e-133 478.4 455 52.1
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 6.1e-133 478.4 462 51.3
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 3.0e-132 476.1 455 51.6
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 5.2e-132 475.3 454 53.5
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 4.1e-129 465.7 455 54.3
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 1.2e-128 464.2 455 50.8
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.6e-128 463.8 456 53.3
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 3.5e-128 462.6 459 56.6
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 4.5e-128 462.2 452 55.8
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 2.5e-126 456.4 456 52.6
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 5.5e-126 455.3 454 51.1
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 1.4e-124 450.7 454 49.3
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 1.2e-123 447.6 451 50.1
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 7.5e-123 444.9 453 50.6
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 7.5e-123 444.9 454 50.2
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.3e-122 444.1 454 50.2
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 1.7e-122 443.7 498 46.2
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 2.2e-122 443.4 451 49.9
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.1e-121 439.5 450 51.8
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 4.1e-121 439.1 454 50.2
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 4.5e-120 435.6 458 49.8
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 7.7e-120 434.9 451 47.9
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 2.5e-118 429.9 439 49.2
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 4.2e-118 429.1 454 51.1
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.6e-117 427.2 393 53.4
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 2.1e-117 426.8 452 48.2
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 2.1e-117 426.8 455 48.8
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 4.7e-117 425.6 450 48.4
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 1.4e-116 424.1 457 49.9
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.8e-116 423.7 458 48.3
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 3.0e-116 422.9 494 46.6
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 2.0e-115 420.2 452 47.1
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 3.4e-115 419.5 462 47.2
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 7.5e-115 418.3 456 46.3
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 1.7e-114 417.2 456 46.5
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 2.2e-114 416.8 450 46.9
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 2.2e-114 416.8 450 47.3
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 1.2e-112 411.0 455 46.6
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 1.6e-112 410.6 460 46.5
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 2.0e-112 410.2 455 46.8
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 1.9e-110 403.7 450 46.7
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 2.5e-110 403.3 467 48.4
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 3.3e-110 402.9 450 46.4
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 3.3e-110 402.9 453 47.7
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 3.3e-110 402.9 435 48.0
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 5.6e-110 402.1 374 51.9
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 1.6e-109 400.6 449 45.9
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 2.1e-109 400.2 450 46.0
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 3.6e-109 399.4 450 46.0
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 3.6e-109 399.4 457 46.2
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 2.3e-108 396.7 456 44.7
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 4.0e-108 396.0 467 47.3
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 5.2e-108 395.6 461 44.7
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 6.8e-108 395.2 452 46.2
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 2.6e-107 393.3 460 45.2
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 5.8e-107 392.1 454 46.0
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 5.8e-107 392.1 447 44.7
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 5.4e-105 385.6 489 43.6
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 7.0e-105 385.2 456 46.5
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 1.0e-103 381.3 452 45.6
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 3.0e-103 379.8 457 43.8
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 5.0e-103 379.0 470 44.0
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 1.9e-102 377.1 401 48.4
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 3.6e-101 372.9 460 45.0
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 1.2e-99 367.9 446 42.8
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 3.4e-99 366.3 433 41.8
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 6.6e-95 352.1 551 37.9
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 1.4e-92 344.4 466 41.0
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 1.8e-92 344.0 464 42.0
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 1.9e-89 334.0 456 40.1
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 7.1e-89 332.0 473 39.7
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 7.8e-88 328.6 442 41.2
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 6.6e-87 325.5 464 40.5
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 2.4e-84 317.0 341 48.1
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 3.4e-83 313.2 460 40.2
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 6.4e-82 308.9 369 45.3
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 1.8e-76 290.8 334 47.9
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 1.1e-68 265.0 457 33.9
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 1.3e-66 258.1 354 38.7
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 1.2e-64 251.5 465 35.3
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 2.7e-64 250.4 278 51.1
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 9.6e-62 241.9 478 33.5
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 1.3e-61 241.5 358 38.5
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 7.9e-56 222.2 214 50.9
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 1.8e-55 221.1 297 42.4
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 6.2e-53 212.6 376 34.0
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 3.5e-48 196.8 236 53.0
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 5.9e-43 179.5 192 44.8
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 1.3e-34 151.8 89 82.0
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 9.4e-33 145.6 449 27.2
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 1.2e-32 145.2 179 53.1
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 2.1e-32 144.4 110 65.5
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 7.0e-28 129.4 438 24.4
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 6.5e-26 122.9 212 31.6
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 9.4e-25 119.0 137 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 2.0e-19 101.3 423 25.3
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 1.3e-18 98.6 138 39.1
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 3.8e-18 97.1 130 40.8
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 1.4e-15 88.6 320 24.7
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 6.3e-13 79.7 50 78.0
arahy.Tifrunner.gnm1.ann1.AAV4SA Arachis hypogaea HOM05D006101 ORTHO05D007422 1.9e-09 68.2 96 41.7


User provided reference genes

Program Settings