Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 0.0e+00 1311.2 645 100.0
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 0.0e+00 1311.2 645 100.0
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 0.0e+00 1145.6 646 87.2
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 0.0e+00 1128.6 644 86.0
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 0.0e+00 1075.8 654 82.6
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 8.8e-311 1069.7 649 81.0
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.9e-305 1052.0 649 79.7
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.2e-304 1049.3 649 79.7
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.1e-304 1048.5 649 79.4
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.5e-302 1042.3 671 79.4
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.8e-292 1008.8 651 77.6
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-288 995.7 648 76.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.4e-284 982.6 629 76.6
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.6e-259 899.4 644 69.3
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.1e-255 886.7 647 68.5
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.0e-254 882.5 672 66.8
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.9e-252 875.9 647 66.9
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.7e-250 869.4 625 67.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.3e-250 869.0 648 67.1
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 8.6e-250 867.1 645 67.1
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.5e-246 856.3 651 65.4
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 5.8e-246 854.4 651 65.6
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.8e-245 851.7 648 64.7
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.9e-245 851.3 650 65.1
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.9e-244 849.4 651 65.7
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 7.8e-243 844.0 647 65.7
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-242 843.2 646 65.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 2.3e-242 842.4 625 66.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.0e-242 842.0 647 65.7
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.1e-240 835.9 646 63.3
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 2.8e-240 835.5 634 65.5
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.8e-240 835.5 631 65.9
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 6.2e-240 834.3 625 65.8
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.6e-238 828.9 649 64.4
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 7.6e-238 827.4 653 64.9
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.2e-236 822.0 650 61.1
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.1e-234 814.7 644 62.9
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.5e-233 813.1 623 63.6
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 5.6e-233 811.2 646 62.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 7.4e-233 810.8 659 62.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.3e-232 810.1 626 64.4
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.6e-232 809.7 646 62.2
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 8.1e-232 807.4 624 63.5
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.3e-231 804.7 647 61.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.2e-230 803.5 628 64.0
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.0e-230 802.7 650 61.4
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 4.5e-230 801.6 646 61.9
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 3.8e-229 798.5 646 61.8
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 6.4e-229 797.7 647 60.4
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.9e-228 796.2 653 60.2
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 7.1e-228 794.3 647 63.7
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.6e-227 793.1 648 60.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 2.1e-227 792.7 646 60.8
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 4.6e-227 791.6 657 61.0
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.0e-226 790.4 648 59.3
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.8e-226 789.6 660 61.2
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.8e-226 789.6 654 61.8
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.1e-226 788.1 647 61.2
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 6.7e-226 787.7 655 61.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.1e-225 786.9 662 61.3
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.6e-225 784.6 648 61.0
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 5.6e-225 784.6 653 61.6
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 7.4e-225 784.3 648 61.0
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.8e-224 782.3 659 59.2
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 8.1e-224 780.8 623 62.1
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.8e-223 779.6 658 58.4
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 4.0e-223 778.5 645 60.5
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 4.0e-223 778.5 660 59.8
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 4.0e-223 778.5 653 60.0
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 3.4e-222 775.4 538 69.3
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.7e-221 773.1 654 61.2
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 3.8e-221 771.9 649 60.7
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 4.9e-221 771.5 619 64.3
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 5.5e-220 768.1 651 60.1
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 9.3e-220 767.3 648 60.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 9.3e-220 767.3 656 59.9
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.3e-218 763.5 652 60.0
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 9.6e-217 757.3 612 61.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.1e-216 756.1 647 59.7
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.1e-215 751.9 590 62.7
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.8e-207 726.5 647 56.6
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.6e-206 722.6 646 56.2
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.8e-205 718.8 650 56.9
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 6.5e-205 718.0 644 57.6
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 3.2e-196 689.1 639 54.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.5e-190 669.1 569 60.5
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.3e-181 640.6 589 54.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 9.8e-177 624.4 671 50.5
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.5e-172 610.5 486 63.2
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.5e-169 598.2 616 53.6
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.1e-163 578.6 580 53.8
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.2e-161 574.3 662 48.9
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 2.9e-160 569.7 510 57.8
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 3.0e-149 533.1 593 49.7
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.4e-143 513.5 632 45.3
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.0e-141 508.1 474 56.8
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 3.5e-134 483.0 622 44.5
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.5e-134 483.0 641 43.7
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.1e-122 444.9 253 83.0
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.9e-120 436.8 556 46.2
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 2.1e-115 420.6 514 49.2
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 7.6e-113 412.1 386 52.6
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-98 364.8 483 44.5
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 2.9e-96 357.1 525 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.1e-94 350.9 634 37.5
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.1e-92 345.1 178 88.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 4.5e-89 333.2 353 51.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.4e-82 310.8 429 43.1
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.2e-79 299.3 197 70.6
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.0e-61 242.3 496 37.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.6e-56 223.0 170 65.9
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 3.6e-54 217.2 259 45.9
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.8e-53 214.9 104 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 5.2e-53 213.4 106 88.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.7e-43 181.8 206 47.6
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 5.4e-34 150.2 137 57.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 7.0e-34 149.8 200 40.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.2e-33 149.1 178 45.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-30 138.7 154 49.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.4e-26 125.6 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.2e-26 124.4 58 89.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.0e-24 117.9 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 8.6e-24 116.3 103 59.2
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 9.5e-23 112.8 105 52.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 6.8e-21 106.7 92 56.5
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.0e-20 105.1 95 55.8
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 6.4e-19 100.1 72 62.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 79 57.0
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 2.5e-15 88.2 79 57.0
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 3.3e-15 87.8 79 55.7
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.2e-14 85.9 79 55.7
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 79 54.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.1e-13 82.8 79 54.4
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 6.4e-11 73.6 179 32.4
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 5.4e-10 70.5 177 33.3
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 2.1e-06 58.5 163 25.8


User provided reference genes

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