Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.6e-126 456.1 226 100.0
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.6e-126 456.1 226 100.0
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 1.2e-118 429.9 226 91.6
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 4.7e-118 427.9 223 92.8
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.2e-116 423.3 226 91.6
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 9.8e-116 420.2 215 94.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 6.3e-115 417.5 226 91.2
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.8e-114 416.0 224 91.1
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.2e-114 415.2 224 91.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 3.5e-113 411.8 224 89.7
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.7e-112 409.5 226 88.9
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.5e-111 406.4 226 87.6
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.5e-111 405.6 226 87.6
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.5e-111 403.7 226 87.2
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 9.5e-111 403.7 215 90.7
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 3.6e-110 401.7 213 90.1
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.2e-109 397.9 224 87.1
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-108 396.7 238 83.2
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-108 396.7 238 83.2
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 3.4e-108 395.2 224 84.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.4e-108 394.8 226 84.1
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 5.8e-108 394.4 215 87.4
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 5.8e-108 394.4 214 88.8
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 7.5e-108 394.0 215 87.4
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 9.8e-108 393.7 213 88.3
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.2e-107 392.5 226 84.1
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.9e-107 392.1 214 86.9
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.7e-107 391.7 215 88.4
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.7e-107 391.7 213 87.8
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.1e-106 390.2 226 83.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.9e-106 389.4 214 86.9
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 3.2e-106 388.7 215 86.5
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 3.2e-106 388.7 214 87.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.4e-106 387.9 226 83.2
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 5.4e-106 387.9 213 86.9
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 7.0e-106 387.5 213 85.0
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.0e-106 387.5 219 86.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.0e-106 387.5 219 86.8
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 9.2e-106 387.1 215 85.1
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.2e-105 386.7 213 86.9
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.0e-105 386.0 213 86.4
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 2.7e-105 385.6 214 85.5
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 3.5e-105 385.2 226 82.7
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 6.0e-105 384.4 215 86.0
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.0e-105 384.4 215 84.2
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.3e-104 382.5 215 84.2
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 3.0e-104 382.1 215 83.7
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 3.0e-104 382.1 214 84.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 5.0e-104 381.3 215 84.7
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.0e-104 381.3 226 81.9
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.0e-104 381.3 226 81.9
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 8.6e-104 380.6 213 84.5
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 8.6e-104 380.6 215 84.2
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 8.6e-104 380.6 226 81.4
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.1e-103 380.2 213 84.0
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.1e-103 380.2 213 86.4
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.5e-103 379.8 214 84.6
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.5e-103 379.8 213 84.0
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 3.3e-103 378.6 228 81.1
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 4.3e-103 378.3 214 84.1
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.2e-102 376.7 214 83.6
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 2.1e-102 375.9 214 83.2
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 8.1e-102 374.0 215 83.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.2e-100 370.2 215 82.8
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 2.0e-100 369.4 216 81.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 2.6e-100 369.0 218 80.3
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.1e-98 363.6 213 81.7
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.1e-98 363.6 213 81.2
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 3.2e-98 362.1 215 78.1
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 1.3e-96 356.7 217 77.4
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.1e-95 353.6 213 77.9
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 7.3e-95 350.9 217 73.7
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.6e-94 349.7 216 75.9
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.8e-94 349.0 216 75.9
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.8e-94 349.0 216 75.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.7e-94 348.2 216 75.0
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 4.7e-94 348.2 216 74.5
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.1e-93 347.1 215 77.2
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.4e-93 346.7 215 75.8
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.8e-93 346.3 215 76.7
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.3e-93 345.9 216 75.0
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 2.3e-93 345.9 216 78.2
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.8e-93 344.4 215 74.0
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.8e-93 344.4 215 74.0
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.0e-92 342.8 213 75.6
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 3.4e-92 342.0 330 57.3
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 4.4e-92 341.7 218 74.3
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 4.4e-92 341.7 218 74.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 7.6e-92 340.9 210 77.1
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.3e-91 340.1 218 73.9
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.3e-91 340.1 218 73.9
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 3.7e-91 338.6 218 72.9
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 4.9e-91 338.2 345 54.8
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.4e-91 337.8 215 72.6
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.4e-90 336.7 198 78.8
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.4e-90 335.9 210 75.7
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.1e-89 332.8 214 72.4
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.0e-88 330.5 209 74.6
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.3e-88 329.3 226 72.6
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 6.8e-85 317.8 215 71.2
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.0e-84 316.2 215 72.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.8e-84 314.7 231 68.0
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.3e-83 313.5 215 70.2
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.7e-83 313.2 216 69.9
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 7.8e-81 304.3 214 72.4
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.1e-79 300.4 207 70.0
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.5e-79 300.1 264 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 9.6e-79 297.4 203 70.0
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 2.6e-76 289.3 264 57.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.6e-73 280.0 201 65.7
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 2.7e-73 279.3 204 67.2
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 4.6e-73 278.5 172 77.3
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 5.1e-72 275.0 172 74.4
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 3.8e-67 258.8 141 89.4
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.5e-66 255.0 353 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-62 243.8 201 59.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.7e-62 242.3 142 82.4
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.5e-58 229.6 173 64.7
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.9e-55 219.9 158 70.9
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 3.8e-51 205.7 108 96.3
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 7.9e-49 198.0 110 89.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.6e-46 190.3 108 86.1
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.5e-35 151.4 236 36.0
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.6e-33 147.1 209 41.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.6e-28 130.6 72 91.7
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.8e-21 107.1 83 67.5
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 7.0e-21 105.1 256 32.0
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.2e-17 94.4 147 41.5
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.0e-15 87.0 57 84.2
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.8e-13 80.5 166 32.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 5.4e-13 79.0 133 33.8
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 9.4e-10 68.2 128 35.9
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 2.2e-06 57.0 134 33.6


User provided reference genes

Program Settings