Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.2e-98 363.2 190 100.0
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 4.4e-77 291.6 153 99.3
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 9.8e-77 290.4 193 82.4
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 4.9e-76 288.1 191 84.3
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 5.4e-75 284.6 189 83.1
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 9.2e-75 283.9 194 80.4
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 3.5e-74 282.0 192 82.3
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 2.4e-67 259.2 195 76.4
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.1e-67 258.5 195 75.9
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 9.2e-67 257.3 195 73.8
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 6.6e-65 251.1 196 75.5
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 9.6e-64 247.3 192 72.4
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 1.8e-62 243.0 196 71.9
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.0e-61 239.6 192 70.8
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 4.4e-61 238.4 151 83.4
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.7e-60 236.5 192 70.3
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.7e-60 236.5 192 70.3
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 5.4e-59 231.5 190 70.5
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 1.6e-58 229.9 194 67.5
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 6.0e-58 228.0 194 70.1
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 6.0e-58 228.0 193 70.5
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 7.8e-58 227.6 196 69.9
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 7.8e-58 227.6 153 81.7
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-57 226.9 183 71.6
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-57 226.9 183 71.6
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.3e-57 226.9 198 67.2
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.3e-57 226.9 198 67.2
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 1.7e-57 226.5 196 69.4
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.7e-57 226.5 198 66.7
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 1.7e-57 226.5 188 72.9
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 2.3e-57 226.1 193 70.5
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 3.9e-57 225.3 199 67.8
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 3.9e-57 225.3 193 69.4
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 3.9e-57 225.3 180 71.1
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 5.1e-57 224.9 161 78.3
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 5.1e-57 224.9 192 71.4
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 5.1e-57 224.9 194 69.1
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.1e-56 223.8 197 66.5
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.5e-56 223.4 145 82.8
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.5e-56 223.4 189 69.3
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.9e-56 223.0 156 80.1
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.5e-56 222.6 198 66.2
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.5e-56 222.6 166 75.9
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 3.3e-56 222.2 154 80.5
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 3.3e-56 222.2 164 76.2
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 4.3e-56 221.9 191 70.7
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 5.6e-56 221.5 153 80.4
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 7.3e-56 221.1 198 69.2
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 9.6e-56 220.7 204 66.2
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 9.6e-56 220.7 197 67.0
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 9.6e-56 220.7 190 68.4
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.3e-55 220.3 175 73.1
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 1.6e-55 219.9 155 79.4
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 2.1e-55 219.5 188 67.6
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 2.8e-55 219.2 153 79.1
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 4.8e-55 218.4 171 70.2
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.1e-54 217.2 156 77.6
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 1.1e-54 217.2 171 70.8
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 1.4e-54 216.9 169 74.0
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 1.4e-54 216.9 167 73.7
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.8e-54 216.5 183 68.3
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 1.8e-54 216.5 201 64.2
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.8e-54 216.5 155 79.4
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 2.4e-54 216.1 192 67.2
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 3.1e-54 215.7 182 68.7
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 5.3e-54 214.9 192 66.1
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 2.6e-53 212.6 196 64.3
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 3.4e-53 212.2 186 67.7
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 4.4e-53 211.8 197 66.0
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 5.8e-53 211.5 154 77.3
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 5.8e-53 211.5 159 74.2
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 7.6e-53 211.1 193 65.8
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 9.9e-53 210.7 159 73.6
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 9.9e-53 210.7 156 74.4
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.3e-52 210.3 195 64.1
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 1.3e-52 210.3 197 65.0
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 1.3e-52 210.3 197 65.0
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 1.3e-52 210.3 190 66.3
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 1.7e-52 209.9 188 66.0
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 1.7e-52 209.9 147 81.0
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 2.2e-52 209.5 197 64.5
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 8.4e-52 207.6 164 70.1
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 1.1e-51 207.2 186 64.5
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.1e-51 207.2 152 75.0
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 1.4e-51 206.8 154 74.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 4.2e-51 205.3 195 63.6
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 4.2e-51 205.3 195 65.1
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 4.2e-51 205.3 207 61.8
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 9.3e-51 204.1 162 71.6
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 1.2e-50 203.8 151 73.5
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.6e-50 203.4 204 64.2
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 1.6e-50 203.4 201 63.7
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 2.1e-50 203.0 189 65.1
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 2.7e-50 202.6 198 62.1
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 2.7e-50 202.6 198 62.1
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 2.7e-50 202.6 153 73.9
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 7.9e-50 201.1 182 66.5
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 1.7e-49 199.9 129 82.9
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 8.7e-49 197.6 173 67.6
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 1.1e-48 197.2 154 70.1
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 5.8e-45 184.9 132 76.5
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 2.2e-44 183.0 168 64.9
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 4.9e-44 181.8 192 57.8
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 4.9e-44 181.8 146 69.9
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 6.4e-44 181.4 151 66.2
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.1e-43 180.6 118 79.7
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 4.2e-43 178.7 168 62.5
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 3.0e-41 172.6 144 66.7
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 1.1e-40 170.6 120 78.3
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 1.1e-40 170.6 117 82.9
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.9e-40 169.9 123 74.8
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 1.3e-39 167.2 117 78.6
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 1.3e-36 157.1 161 57.8
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 2.2e-36 156.4 124 65.3
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 4.9e-36 155.2 105 79.0
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 5.1e-33 145.2 127 63.0
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 4.3e-32 142.1 156 59.6
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 3.7e-31 139.0 136 55.9
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 6.3e-31 138.3 86 83.7
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.4e-30 137.1 86 83.7
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.4e-30 136.3 86 82.6
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 6.5e-28 128.3 149 53.7
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.5e-24 117.1 86 73.3
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 6.3e-23 111.7 133 54.9
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.2e-21 107.5 78 74.4
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 1.7e-20 103.6 92 65.2
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 3.2e-19 99.4 79 67.1
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.7e-15 87.0 197 38.6
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 5.1e-09 65.5 105 37.1
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.1e-06 57.8 115 31.3
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 9.1e-06 54.7 122 33.6


User provided reference genes

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