Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.2e-214 747.7 358 100.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.5e-208 728.0 348 100.0
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 7.1e-169 597.4 365 80.5
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.9e-151 538.5 364 73.6
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 3.9e-151 538.5 364 73.4
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.5e-150 535.8 359 74.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.6e-147 525.8 360 74.7
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.5e-145 519.2 358 74.3
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.1e-140 501.9 368 69.0
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.7e-138 496.5 368 68.5
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 8.5e-138 494.2 362 69.1
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.6e-136 490.0 345 71.0
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.0e-135 487.3 341 70.7
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.8e-135 486.5 343 70.3
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.3e-135 486.1 336 70.5
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.5e-134 483.4 317 74.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 4.3e-134 481.9 333 72.4
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.7e-134 481.5 324 73.1
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 9.1e-132 474.2 335 70.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.6e-131 472.6 342 69.6
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.7e-130 469.9 340 70.6
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.2e-130 469.5 351 65.0
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.9e-130 469.2 346 66.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.9e-130 469.2 341 68.9
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.9e-130 469.2 338 69.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.8e-130 468.8 349 64.8
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.1e-129 467.2 324 70.4
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.1e-129 467.2 322 71.7
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 3.2e-129 465.7 320 71.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.2e-129 465.7 349 64.5
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.5e-129 464.9 347 66.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 7.2e-129 464.5 321 70.7
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 9.4e-129 464.2 384 62.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 9.4e-129 464.2 354 64.4
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.2e-128 463.8 321 71.7
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.2e-128 463.8 335 70.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.2e-128 463.8 322 71.1
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.0e-127 460.7 357 64.7
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.0e-127 460.7 357 64.7
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 3.9e-127 458.8 314 69.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.3e-126 455.7 324 69.1
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.3e-126 455.7 324 69.1
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 5.7e-126 454.9 324 69.1
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 5.7e-126 454.9 369 63.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 9.7e-126 454.1 356 64.0
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.3e-125 453.8 323 70.3
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.2e-125 453.0 313 71.2
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.2e-125 453.0 323 70.0
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.8e-125 452.6 341 65.1
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 4.8e-125 451.8 252 82.1
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.4e-124 449.5 314 66.6
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.5e-123 446.8 305 69.5
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.5e-123 446.8 331 68.6
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.6e-123 446.0 325 67.7
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 4.5e-123 445.3 335 66.3
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.0e-122 444.1 343 63.0
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.9e-122 442.6 343 64.1
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 2.5e-121 439.5 312 68.6
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 4.2e-121 438.7 322 67.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.1e-120 436.4 322 66.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.7e-120 436.0 306 68.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 3.0e-119 432.6 342 61.7
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 3.9e-119 432.2 342 64.3
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 5.2e-119 431.8 308 70.1
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 5.2e-119 431.8 345 64.9
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.1e-118 430.6 335 65.1
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.0e-118 429.9 326 67.5
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.6e-118 429.5 336 64.3
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.3e-117 427.2 306 67.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.2e-117 426.4 254 79.1
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 4.8e-117 425.2 346 63.0
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 8.2e-117 424.5 332 64.5
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.1e-116 424.1 342 64.9
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 3.1e-116 422.5 295 70.2
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 5.3e-116 421.8 298 66.8
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.0e-115 419.9 322 66.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.5e-115 419.1 327 63.3
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.5e-115 418.7 244 80.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 5.9e-115 418.3 306 66.7
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.3e-114 417.2 350 62.0
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.9e-114 416.0 314 66.9
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.8e-111 406.8 332 63.6
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 5.7e-110 401.7 338 62.1
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 9.1e-108 394.4 300 66.0
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.3e-106 390.6 370 57.0
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.7e-106 390.2 327 62.1
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 5.7e-102 375.2 314 58.3
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.2e-101 373.2 334 56.6
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 8.3e-101 371.3 338 57.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.4e-100 370.5 353 57.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 3.1e-100 369.4 247 70.0
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.6e-96 357.1 228 72.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 7.5e-94 348.2 316 59.2
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 3.1e-92 342.8 192 80.2
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.2e-91 340.9 253 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.8e-87 327.0 337 50.1
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.8e-87 327.0 271 60.9
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.0e-84 315.1 195 75.4
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.5e-83 312.8 291 53.3
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.6e-83 312.4 280 56.4
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-79 300.4 334 54.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 3.7e-77 292.7 278 53.2
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 7.8e-75 285.0 303 46.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 3.7e-69 266.2 196 60.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-64 250.8 227 52.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.3e-58 230.3 296 47.0
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.0e-58 229.9 123 82.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.3e-57 226.1 125 77.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 4.2e-52 209.5 114 86.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 5.4e-52 209.1 211 52.6
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.2e-51 208.0 179 60.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.0e-50 203.4 206 55.3
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 2.4e-44 183.7 112 76.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 5.8e-38 162.5 270 38.9
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.4e-37 159.1 185 49.7
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 8.4e-37 158.7 99 75.8
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.4e-33 145.6 173 49.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.6e-32 144.4 197 39.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.9e-29 133.7 73 87.7
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 3.2e-28 130.2 62 90.3
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-26 124.4 345 28.4
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.6e-22 110.5 98 58.2
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.7e-21 107.8 218 37.6
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 3.8e-21 106.7 56 76.8
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 6.5e-21 105.9 61 85.2
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.1e-20 105.1 199 39.2
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.9e-20 104.4 149 44.3
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 4.2e-20 103.2 84 69.0
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.7e-19 100.5 201 38.8
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 3.6e-19 100.1 63 76.2
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 6.7e-18 95.9 86 55.8
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.2e-16 90.9 103 43.7
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 5.9e-14 82.8 54 75.9
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.1e-09 68.6 52 65.4
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 5.7e-09 66.2 49 65.3
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 7.0e-07 59.3 111 37.8
SHI38523 Sapria himalayana HOM05D000616 ORTHO05D000062 7.7e-06 55.8 43 67.4


User provided reference genes

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