Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 5.9e-157 558.9 750 100.0
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 4.8e-151 539.3 741 100.0
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 1.0e-113 415.2 750 86.1
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 3.3e-107 393.7 748 85.3
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 7.3e-91 339.3 743 81.8
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.1e-74 284.6 158 85.4
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 8.1e-74 282.7 741 78.7
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 1.9e-70 271.6 743 77.4
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 5.4e-70 270.0 741 77.3
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 1.3e-68 265.4 734 58.2
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 5.1e-68 263.5 739 76.7
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 1.5e-67 261.9 734 78.1
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 2.8e-66 257.7 739 76.6
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 4.8e-66 256.9 743 76.9
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 5.3e-65 253.4 731 77.4
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 6.9e-65 253.1 735 77.7
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 2.6e-64 251.1 734 76.0
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 4.2e-62 243.8 730 77.5
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 5.4e-62 243.4 730 76.6
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 1.6e-61 241.9 730 76.7
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 2.1e-61 241.5 728 76.0
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 7.9e-61 239.6 735 75.4
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 8.7e-60 236.1 729 75.9
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.5e-59 235.3 737 75.7
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 9.6e-59 232.6 735 75.9
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 3.7e-58 230.7 741 75.6
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 2.4e-57 228.0 728 75.5
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 6.9e-57 226.5 730 72.2
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 9.0e-57 226.1 730 75.8
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 9.0e-57 226.1 735 75.8
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 9.0e-57 226.1 735 75.6
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 2.6e-56 224.6 741 74.5
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 1.7e-55 221.9 728 75.0
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 2.2e-55 221.5 735 74.8
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.9e-55 221.1 740 74.9
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 4.9e-55 220.3 728 75.0
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 1.1e-54 219.2 728 75.3
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.4e-54 218.8 737 74.2
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.4e-54 218.8 737 74.2
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 2.5e-54 218.0 730 74.8
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.2e-53 215.7 740 58.8
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 2.7e-53 214.5 730 74.2
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 4.6e-53 213.8 735 74.7
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.0e-53 213.4 149 69.8
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 6.0e-53 213.4 728 74.5
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 6.0e-53 213.4 730 71.8
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 3.0e-52 211.1 150 66.0
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 1.1e-51 209.1 149 67.8
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 1.5e-51 208.8 729 74.5
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.6e-50 205.3 732 73.9
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 4.8e-50 203.8 148 65.5
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 4.8e-50 203.8 731 73.5
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 1.1e-49 202.6 731 68.7
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.1e-49 202.6 154 63.6
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 1.8e-49 201.8 150 63.3
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 2.4e-49 201.4 731 73.6
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 9.0e-49 199.5 149 62.4
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 5.8e-48 196.8 149 63.1
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 5.8e-48 196.8 733 73.1
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 7.6e-48 196.4 734 75.6
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 1.0e-47 196.1 154 64.3
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 2.9e-47 194.5 733 72.7
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 8.4e-47 193.0 149 60.4
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.9e-46 191.8 738 72.6
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 4.2e-46 190.7 731 70.7
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 5.5e-46 190.3 134 68.7
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 5.5e-46 190.3 135 67.4
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 9.3e-46 189.5 149 60.4
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 1.2e-45 189.1 728 73.4
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 7.9e-45 186.4 738 72.2
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.0e-44 186.0 149 57.0
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 5.1e-44 183.7 146 57.5
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 1.1e-43 182.6 732 72.3
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.1e-43 182.6 149 55.7
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 1.1e-43 182.6 149 55.7
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 2.5e-43 181.4 727 72.5
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 3.3e-43 181.0 150 55.3
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 7.4e-43 179.9 152 54.6
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 4.8e-42 177.2 147 53.1
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 6.9e-41 173.3 220 43.2
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.5e-40 172.2 146 56.8
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 1.1e-38 166.0 210 43.8
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 1.9e-38 165.2 211 44.1
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 1.9e-38 165.2 147 53.1
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 2.5e-38 164.9 218 42.7
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 4.2e-38 164.1 147 53.1
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 4.2e-38 164.1 149 51.0
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 1.6e-37 162.2 154 55.8
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 2.0e-35 155.2 144 50.7
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 2.2e-34 151.8 149 52.3
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 1.8e-33 148.7 149 49.7
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 5.3e-33 147.1 220 38.6
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 6.9e-33 146.7 143 49.0
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 3.4e-32 144.4 151 48.3
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 7.7e-32 143.3 218 39.0
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 2.5e-30 138.3 208 38.0
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 5.7e-27 127.1 128 55.5
CAN.G322.18 Capsicum annuum HOM05D006858 ORTHO05D008767 7.4e-27 126.7 226 35.4
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 6.5e-23 113.6 119 52.1
GSVIVG01031788001 Vitis vinifera HOM05D006858 ORTHO05D008767 9.4e-22 109.8 81 63.0
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 2.7e-21 108.2 144 40.3
Carub.0007s3618 Capsella rubella HOM05D006858 ORTHO05D008767 1.5e-19 102.4 81 59.3
Carub.0007s3622 Capsella rubella HOM05D006858 ORTHO05D008767 1.1e-17 96.3 220 30.9
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 3.5e-16 91.3 83 49.4
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 5.0e-15 87.4 69 53.6
Oeu007259.1 Olea europaea HOM05D006858 ORTHO05D008767 1.8e-12 79.0 83 51.8
RcHm_v2.0_Chr7g0233231 Rosa chinensis HOM05D006858 ORTHO05D008767 1.7e-10 72.4 69 53.6
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 1.8e-09 68.9 53 56.6
TPR.G6774 Trifolium pratense HOM05D006858 ORTHO05D008767 4.1e-09 67.8 67 49.3
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 7.7e-08 63.5 95 35.8
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 7.7e-08 63.5 95 35.8
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.7e-08 63.5 198 23.7
CARHR074340 Cardamine hirsuta HOM05D000891 ORTHO05D000761 1.3e-07 62.8 89 31.5
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 1.7e-07 62.4 95 34.7
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 1.7e-07 62.4 95 36.8
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 1.7e-07 62.4 93 35.5
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 2.9e-07 61.6 91 31.9
BcaC02g10932 Brassica carinata HOM05D004255 ORTHO05D004815 3.8e-07 61.2 125 30.4
C04p23520 Brassica napus HOM05D004255 ORTHO05D004815 3.8e-07 61.2 125 30.4
Oeu049407.2 Olea europaea HOM05D007390 ORTHO05D009114 3.8e-07 61.2 139 23.7
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 5.0e-07 60.8 225 25.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.0e-07 60.8 95 34.7
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 5.0e-07 60.8 95 31.6
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 6.5e-07 60.5 95 33.7
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 6.5e-07 60.5 79 31.6
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 6.5e-07 60.5 95 31.6
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 6.5e-07 60.5 134 24.6
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 8.5e-07 60.1 95 32.6
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 8.5e-07 60.1 185 26.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 8.5e-07 60.1 134 24.6
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 1.1e-06 59.7 84 32.1
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 1.1e-06 59.7 95 34.7
Prupe.3G263900 Prunus persica HOM05D000001 ORTHO05D000003 1.1e-06 59.7 131 27.5
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.1e-06 59.7 210 25.2
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.5e-06 59.3 134 26.9
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.5e-06 59.3 144 27.1
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 1.5e-06 59.3 95 33.7
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 1.9e-06 58.9 109 27.5
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 1.9e-06 58.9 80 38.8
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.9e-06 58.9 95 32.6
CAN.G322.17 Capsicum annuum HOM05D002196 ORTHO05D011452 2.5e-06 58.5 50 52.0
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 2.5e-06 58.5 94 29.8
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 2.5e-06 58.5 90 34.4
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 2.5e-06 58.5 95 33.7
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.5e-06 58.5 95 30.5
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 2.5e-06 58.5 158 24.7
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 3.2e-06 58.2 138 26.1
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 3.2e-06 58.2 95 32.6
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 4.2e-06 57.8 78 38.5
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 4.2e-06 57.8 196 25.5
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 5.5e-06 57.4 95 32.6
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 5.5e-06 57.4 95 32.6
CSS0012594 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 5.5e-06 57.4 134 23.1
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 5.5e-06 57.4 113 31.9
Haze_00971 Corylus avellana HOM05D000001 ORTHO05D009507 7.2e-06 57.0 127 27.6
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 7.2e-06 57.0 134 25.4
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 7.2e-06 57.0 139 23.7
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.2e-06 57.0 95 30.5
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.2e-06 57.0 78 37.2
Sp5g35650 Schrenkiella parvula HOM05D000891 ORTHO05D000761 7.2e-06 57.0 89 28.1
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 7.2e-06 57.0 78 37.2
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 9.4e-06 56.6 100 29.0
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 9.4e-06 56.6 80 36.2
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 9.4e-06 56.6 95 32.6


User provided reference genes

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