Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.8e-154 548.1 348 100.0
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 4.8e-154 548.1 348 100.0
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.0e-107 393.3 365 74.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 5.4e-97 358.6 254 85.0
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.1e-93 346.7 355 72.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 6.8e-92 341.7 389 67.1
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.2e-91 340.9 366 68.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.9e-89 333.6 174 88.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.9e-89 333.6 174 88.5
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.4e-89 333.2 174 89.1
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.2e-89 332.8 173 90.2
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 7.1e-89 331.6 174 87.9
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.7e-88 329.7 314 66.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 3.5e-88 329.3 173 87.3
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.6e-88 328.9 308 72.1
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 6.0e-88 328.6 173 87.9
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 7.8e-88 328.2 174 87.9
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.3e-87 327.4 173 88.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.7e-87 327.0 173 88.4
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 6.6e-87 325.1 173 87.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 6.6e-87 325.1 173 85.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 8.6e-87 324.7 173 86.7
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.1e-86 324.3 364 65.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.5e-86 323.9 173 86.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.9e-86 323.6 173 87.3
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.9e-86 323.6 173 83.8
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 2.5e-86 323.2 173 87.3
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.3e-86 321.6 173 83.8
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.5e-86 321.2 173 87.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 9.5e-86 321.2 174 84.5
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.6e-85 320.5 367 65.4
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.1e-85 320.1 372 64.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.1e-85 320.1 173 83.2
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.8e-85 319.7 173 83.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.8e-85 319.7 173 85.5
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 4.7e-85 318.9 173 84.4
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.7e-85 318.9 173 85.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.7e-85 318.9 172 86.0
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 6.2e-85 318.5 174 84.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 8.1e-85 318.2 173 85.0
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 8.1e-85 318.2 173 83.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.4e-84 317.4 173 85.5
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.4e-84 317.4 173 85.5
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.8e-84 317.0 262 64.1
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.1e-84 316.2 173 84.4
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.1e-84 316.2 173 83.2
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.1e-84 316.2 173 82.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 3.1e-84 316.2 173 82.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.1e-84 316.2 174 82.8
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.0e-84 315.8 173 83.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 6.8e-84 315.1 349 57.0
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 6.8e-84 315.1 173 85.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 6.8e-84 315.1 173 83.2
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.2e-83 314.3 173 84.4
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.2e-83 314.3 173 84.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.2e-83 314.3 173 82.1
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.5e-83 313.9 173 82.7
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.5e-83 313.9 174 82.8
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 2.6e-83 313.2 173 82.1
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.6e-83 313.2 174 83.3
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.4e-83 312.8 173 83.8
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 4.4e-83 312.4 173 84.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 5.8e-83 312.0 173 83.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 7.6e-83 311.6 173 82.7
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.6e-83 311.6 174 82.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.7e-82 310.5 173 82.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.7e-82 310.5 173 82.1
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.2e-82 310.1 173 82.7
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.2e-82 310.1 174 81.6
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.9e-82 309.7 173 82.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.9e-82 309.7 173 82.7
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.9e-82 309.7 173 83.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 3.7e-82 309.3 351 54.4
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 3.7e-82 309.3 173 82.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.9e-82 308.9 173 83.2
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.4e-82 308.1 173 82.7
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 8.4e-82 308.1 173 83.2
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.4e-82 308.1 173 82.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.1e-81 307.8 173 84.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-81 307.8 295 55.9
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.4e-81 307.4 172 82.0
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-81 307.0 173 82.7
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.1e-81 305.8 173 80.9
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 4.1e-81 305.8 364 49.2
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 7.1e-81 305.1 171 83.0
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.1e-81 305.1 173 80.3
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 9.2e-81 304.7 173 80.9
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 9.2e-81 304.7 173 81.5
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.2e-80 304.3 173 82.1
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.2e-80 304.3 173 80.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 2.1e-80 303.5 173 80.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.1e-80 303.5 173 78.0
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.7e-80 303.1 173 81.5
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.7e-80 303.1 173 81.5
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.7e-80 303.1 173 79.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 6.0e-80 302.0 305 55.1
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 7.8e-80 301.6 173 81.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 7.8e-80 301.6 173 81.5
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.0e-79 301.2 172 84.3
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.3e-79 300.8 173 80.9
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.3e-79 300.8 173 79.2
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-79 300.1 173 80.3
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 6.6e-79 298.5 171 78.9
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.5e-78 297.4 172 80.2
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.9e-78 297.0 307 55.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.3e-78 296.2 174 77.6
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 5.6e-78 295.4 173 78.0
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.2e-77 294.3 171 78.9
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-77 294.3 170 80.0
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.8e-77 293.1 363 54.0
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 8.1e-77 291.6 176 79.5
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 5.2e-76 288.9 174 77.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.0e-75 287.0 176 78.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 5.8e-75 285.4 173 74.6
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 6.4e-74 282.0 175 76.6
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.4e-73 280.0 152 85.5
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.5e-72 276.2 152 83.6
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 7.3e-70 268.5 173 72.3
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 4.8e-69 265.8 169 73.4
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.8e-66 256.1 172 69.8
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.4e-65 254.2 172 71.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.2e-64 251.1 172 70.3
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-62 244.2 171 69.6
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.5e-59 234.2 128 81.2
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 4.9e-58 229.2 177 59.9
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.4e-57 226.9 177 59.3
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 9.3e-57 224.9 177 59.3
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 9.3e-57 224.9 177 59.9
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.1e-56 223.8 177 58.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.8e-55 220.7 122 78.7
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.9e-54 217.2 173 63.0
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.3e-54 216.5 128 80.5
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-53 214.2 173 61.3
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.9e-52 208.8 115 84.3
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.0e-52 208.4 111 87.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.2e-50 203.8 173 60.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.3e-47 193.7 170 56.5
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 4.3e-46 189.5 170 55.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 7.4e-46 188.7 174 57.5
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 7.4e-46 188.7 151 64.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.2e-45 185.3 173 55.5
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.7e-42 177.6 171 50.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.4e-41 174.5 124 64.5
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.4e-41 174.5 124 64.5
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 4.2e-41 172.9 97 82.5
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.5e-33 147.1 94 71.3
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.6e-32 144.4 148 47.3
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.0e-30 137.5 174 44.3
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 4.7e-24 116.3 152 46.7
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-20 105.1 172 38.4
TPR.G8938 Trifolium pratense HOM05D004797 ORTHO05D005752 3.1e-12 77.0 131 45.0
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.0e-07 62.0 141 30.5


User provided reference genes

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