Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 5.5e-72 274.2 144 100.0
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 5.5e-72 274.2 144 100.0
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 5.9e-66 254.2 146 90.4
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 9.5e-64 246.9 144 86.8
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 1.4e-62 243.0 144 88.9
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 4.1e-59 231.5 144 84.0
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 4.5e-58 228.0 144 83.3
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.0e-57 226.9 146 83.6
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 4.7e-55 218.0 144 79.9
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 2.3e-54 215.7 149 79.9
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 8.9e-54 213.8 145 77.9
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 8.9e-54 213.8 145 77.9
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.0e-53 212.6 143 76.2
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 1.3e-52 209.9 144 77.8
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.2e-52 209.1 144 76.4
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.2e-52 209.1 144 76.4
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 1.8e-51 206.1 144 75.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 7.0e-51 204.1 144 73.6
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 1.2e-50 203.4 144 74.3
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.0e-50 202.6 144 72.9
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 2.7e-50 202.2 144 76.4
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.5e-50 201.8 144 75.0
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 3.5e-50 201.8 148 75.0
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.7e-49 199.5 144 72.2
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 2.3e-49 199.1 145 73.8
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 3.0e-49 198.7 144 73.6
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 3.9e-49 198.4 144 74.3
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 5.0e-49 198.0 144 72.9
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 8.6e-49 197.2 145 73.8
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 1.5e-48 196.4 144 72.2
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.5e-48 196.4 138 73.9
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.3e-48 195.3 144 72.2
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 4.3e-48 194.9 144 71.5
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 5.6e-48 194.5 144 72.2
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.6e-48 194.5 137 75.2
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 5.6e-48 194.5 149 71.8
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 7.3e-48 194.1 144 70.1
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 7.3e-48 194.1 136 75.0
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 7.3e-48 194.1 125 79.2
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 9.5e-48 193.7 137 75.2
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 1.6e-47 193.0 134 76.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 2.1e-47 192.6 144 70.8
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 2.1e-47 192.6 137 74.5
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.8e-47 192.2 144 71.5
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.8e-47 192.2 137 74.5
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.8e-47 192.2 137 74.5
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 3.6e-47 191.8 144 72.9
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 3.6e-47 191.8 144 72.2
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 3.6e-47 191.8 141 74.5
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 4.7e-47 191.4 137 75.2
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 1.4e-46 189.9 144 70.1
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.8e-46 189.5 168 61.9
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 4.0e-46 188.3 146 68.5
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 4.0e-46 188.3 144 70.8
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 4.0e-46 188.3 144 69.4
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 4.0e-46 188.3 144 70.8
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 4.0e-46 188.3 136 72.8
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 5.2e-46 188.0 146 67.1
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 6.8e-46 187.6 141 73.0
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 8.9e-46 187.2 148 70.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.2e-45 186.8 139 73.4
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.5e-45 186.4 144 70.8
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.6e-45 185.7 116 81.9
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 3.4e-45 185.3 144 70.1
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 5.8e-45 184.5 119 80.7
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 7.5e-45 184.1 156 65.4
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 7.5e-45 184.1 120 78.3
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 9.8e-45 183.7 136 72.1
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 9.8e-45 183.7 125 75.2
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 9.8e-45 183.7 125 75.2
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 1.3e-44 183.3 147 68.7
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.7e-44 183.0 119 78.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 2.9e-44 182.2 119 77.3
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.9e-44 182.2 119 77.3
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 3.7e-44 181.8 138 68.8
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 3.7e-44 181.8 144 68.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 3.7e-44 181.8 121 76.0
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 4.9e-44 181.4 144 69.4
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 4.9e-44 181.4 125 74.4
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 6.4e-44 181.0 144 67.4
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 8.3e-44 180.6 132 72.7
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 1.1e-43 180.3 136 69.1
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.1e-43 180.3 111 84.7
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 1.4e-43 179.9 143 65.0
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.4e-43 179.9 165 61.8
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.4e-43 179.9 136 71.3
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.9e-43 179.5 141 68.8
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.9e-43 179.5 118 78.0
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 2.4e-43 179.1 144 67.4
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 4.1e-43 178.3 144 67.4
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 4.6e-42 174.9 144 67.4
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.3e-41 173.3 144 68.1
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 1.7e-41 172.9 132 69.7
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 8.6e-41 170.6 136 67.6
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 9.5e-40 167.2 150 61.3
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.6e-39 166.4 130 67.7
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 2.1e-39 166.0 144 62.5
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.7e-39 164.9 150 62.7
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 6.4e-36 154.5 125 67.2
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 9.2e-35 150.6 130 65.4
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.0e-33 147.1 101 76.2
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 1.7e-33 146.4 118 66.1
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.9e-32 142.9 150 56.0
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 3.3e-32 142.1 100 74.0
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 6.2e-31 137.9 82 84.1
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.8e-30 136.3 101 71.3
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 8.9e-30 134.0 130 57.7
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.2e-29 133.7 98 69.4
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 2.0e-29 132.9 130 56.9
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 2.0e-29 132.9 119 60.5
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 2.0e-29 132.9 119 61.3
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 2.0e-29 132.9 173 48.0
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 2.0e-29 132.9 120 59.2
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 3.4e-29 132.1 130 56.9
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 4.4e-29 131.7 130 56.2
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 5.8e-29 131.3 130 57.7
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 5.8e-29 131.3 123 59.3
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 7.6e-29 131.0 130 56.2
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 9.9e-29 130.6 117 58.1
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 8.4e-28 127.5 70 90.0
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 1.4e-27 126.7 140 53.6
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.2e-26 123.6 85 76.5
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 3.5e-26 122.1 83 77.1
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 2.5e-24 115.9 167 44.9
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 9.6e-24 114.0 98 61.2
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 1.5e-21 106.7 117 51.3
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.3e-20 103.6 73 75.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 8.4e-20 100.9 138 43.5
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 1.1e-16 90.5 134 45.5
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 4.8e-15 85.1 111 48.6
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.6e-13 77.8 65 61.5
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 2.1e-10 69.7 85 48.2
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.0e-09 67.4 35 88.6
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 1.3e-09 67.0 84 48.8
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.3e-08 62.4 33 84.8
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 8.1e-07 57.8 66 53.0
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 8.1e-07 57.8 66 53.0


User provided reference genes

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