Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29579_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 2.9e-70 268.5 137 100.0
Medtr7g109220 Medicago truncatula HOM05D003529 ORTHO05D004106 6.3e-41 171.0 140 66.4
Psat3g020880 Pisum sativum HOM05D003529 ORTHO05D004106 1.4e-40 169.9 138 64.5
Psat3g124960 Pisum sativum HOM05D003529 ORTHO05D004106 2.6e-39 165.6 138 63.0
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 4.2e-29 131.7 138 53.6
Lalb_Chr21g0309411 Lupinus albus HOM05D003529 ORTHO05D004106 7.2e-29 131.0 128 55.5
Lj1g0023980 Lotus japonicus HOM05D003529 ORTHO05D004106 2.3e-27 125.9 134 51.5
Glyma.02G015200 Glycine max HOM05D003529 ORTHO05D004106 3.3e-26 122.1 139 52.5
Glyma.03G217700 Glycine max HOM05D003529 ORTHO05D004106 4.4e-26 121.7 138 49.3
Phvul.007G217000 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 1.7e-25 119.8 143 48.3
Phvul.001G211200 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 2.8e-25 119.0 131 52.7
VMungo0720G2108 Vigna mungo HOM05D003529 ORTHO05D004106 6.3e-25 117.9 143 47.6
Glyma.10G015800 Glycine max HOM05D003529 ORTHO05D004106 1.1e-24 117.1 136 50.7
VMungo1383G3047 Vigna mungo HOM05D003529 ORTHO05D004106 1.8e-24 116.3 134 51.5
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 1.2e-23 113.6 125 51.2
Ciclev10022679m.g Citrus clementina HOM05D003529 ORTHO05D004106 1.2e-23 113.6 134 49.3
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 1.2e-23 113.6 139 50.4
Lalb_Chr15g0078411 Lupinus albus HOM05D003529 ORTHO05D004106 1.2e-23 113.6 134 50.0
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 3.5e-23 112.1 130 51.5
Lj5g0005836 Lotus japonicus HOM05D003529 ORTHO05D004106 4.5e-23 111.7 130 47.7
Ca_10307_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 5.9e-23 111.3 132 50.0
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 1.3e-22 110.2 129 47.3
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 1.7e-22 109.8 135 45.9
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 2.2e-22 109.4 135 48.1
Potri.002G200000 Populus trichocarpa HOM05D003529 ORTHO05D004106 3.8e-22 108.6 133 46.6
Lalb_Chr02g0146621 Lupinus albus HOM05D003529 ORTHO05D004106 6.5e-22 107.8 131 48.1
Lalb_Chr18g0046821 Lupinus albus HOM05D003529 ORTHO05D004106 1.5e-21 106.7 133 52.6
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 1.9e-21 106.3 138 47.8
Thecc.01G308200 Theobroma cacao HOM05D003529 ORTHO05D004106 1.9e-21 106.3 139 47.5
Atru.chr5.1067 Acer truncatum HOM05D003529 ORTHO05D004106 2.5e-21 105.9 135 49.6
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 3.2e-21 105.5 134 47.8
Sabra02G0158400 Salix brachista HOM05D003529 ORTHO05D004106 4.2e-21 105.1 133 46.6
RcHm_v2.0_Chr7g0242001 Rosa chinensis HOM05D003529 ORTHO05D004106 9.4e-21 104.0 135 45.2
Gorai.007G125400 Gossypium raimondii HOM05D003529 ORTHO05D004106 1.2e-20 103.6 141 48.2
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 1.6e-20 103.2 133 46.6
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 2.7e-20 102.4 134 45.5
Gohir.D11G117100 Gossypium hirsutum HOM05D003529 ORTHO05D004106 2.7e-20 102.4 141 47.5
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 4.7e-20 101.7 131 47.3
Gohir.A11G112000 Gossypium hirsutum HOM05D003529 ORTHO05D004106 6.1e-20 101.3 139 46.8
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 8.0e-20 100.9 141 43.3
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 8.0e-20 100.9 137 45.3
AT3G62650 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 1.4e-19 100.1 133 45.9
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 1.4e-19 100.1 139 45.3
THA.LOC104802191 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 1.4e-19 100.1 125 44.8
AL5G45400 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 1.8e-19 99.8 133 45.1
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 1.8e-19 99.8 135 44.4
COL.COLO4_23282 Corchorus olitorius HOM05D003529 ORTHO05D004106 1.8e-19 99.8 139 46.8
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 3.0e-19 99.0 138 44.9
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 5.2e-19 98.2 131 44.3
CARHR172920 Cardamine hirsuta HOM05D003529 ORTHO05D004106 1.2e-18 97.1 136 44.1
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 1.2e-18 97.1 131 45.8
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 2.0e-18 96.3 130 44.6
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 2.0e-18 96.3 130 44.6
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 2.6e-18 95.9 137 43.1
Thhalv10006300m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 2.6e-18 95.9 131 44.3
Gohir.D12G131300 Gossypium hirsutum HOM05D003529 ORTHO05D004106 2.6e-18 95.9 141 45.4
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 2.6e-18 95.9 132 46.2
Gohir.A12G127800 Gossypium hirsutum HOM05D003529 ORTHO05D004106 3.4e-18 95.5 141 45.4
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 3.4e-18 95.5 128 47.7
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 3.4e-18 95.5 134 41.0
QL12p028794 Quercus lobata HOM05D003529 ORTHO05D004106 3.4e-18 95.5 141 42.6
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 3.4e-18 95.5 132 43.2
C04p00390 Brassica napus HOM05D003529 ORTHO05D004106 4.4e-18 95.1 129 41.9
Gorai.008G142600 Gossypium raimondii HOM05D003529 ORTHO05D004106 4.4e-18 95.1 141 45.4
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.5e-18 94.4 128 43.0
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 9.7e-18 94.0 129 41.9
PGR119G1167 Punica granatum HOM05D003529 ORTHO05D004106 9.7e-18 94.0 128 44.5
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 1.3e-17 93.6 134 39.6
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 1.7e-17 93.2 137 44.5
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.7e-17 93.2 129 45.7
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.7e-17 93.2 129 45.7
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 2.2e-17 92.8 137 44.5
A05p00440 Brassica napus HOM05D003529 ORTHO05D004106 2.2e-17 92.8 129 41.1
BraA05t19042Z Brassica rapa HOM05D003529 ORTHO05D004106 2.2e-17 92.8 129 41.1
Hma1.2p1_0494F.1_g165600 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 2.8e-17 92.4 132 46.2
Hma1.2p1_0212F.1_g090160 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 3.7e-17 92.0 134 46.3
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 6.3e-17 91.3 138 41.3
MD03G1298600 Malus domestica HOM05D003529 ORTHO05D004106 8.3e-17 90.9 133 44.4
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 1.1e-16 90.5 137 43.8
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 1.1e-16 90.5 137 43.8
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 1.4e-16 90.1 131 46.6
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 1.4e-16 90.1 136 42.6
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 1.4e-16 90.1 136 42.6
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 1.4e-16 90.1 136 42.6
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 1.8e-16 89.7 131 38.9
BcaB02g08109 Brassica carinata HOM05D003529 ORTHO05D004106 2.4e-16 89.4 136 40.4
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 3.1e-16 89.0 135 43.7
Sabra14G0092800 Salix brachista HOM05D003529 ORTHO05D004106 3.1e-16 89.0 136 43.4
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 4.1e-16 88.6 137 42.3
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 4.1e-16 88.6 137 42.3
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 7.0e-16 87.8 130 43.1
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.0e-16 87.8 135 43.7
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 9.1e-16 87.4 131 41.2
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 9.1e-16 87.4 134 42.5
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 1.2e-15 87.0 136 41.9
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 1.6e-15 86.7 124 46.0
Aqoxy2G02834 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 1.6e-15 86.7 133 40.6
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 1.6e-15 86.7 136 41.2
CSS0040208 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 1.6e-15 86.7 132 42.4
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 1.6e-15 86.7 129 42.6
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 2.0e-15 86.3 129 46.5
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 2.7e-15 85.9 131 41.2
Nitab4.5_0005587g0040 Nicotiana tabacum HOM05D003529 ORTHO05D004106 4.5e-15 85.1 132 42.4
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 5.9e-15 84.7 136 41.2
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 7.7e-15 84.3 132 41.7
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 7.7e-15 84.3 133 41.4
Aa31LG1G28790 Aethionema arabicum HOM05D003529 ORTHO05D004106 1.0e-14 84.0 131 38.9
DCAR_002866 Daucus carota HOM05D003529 ORTHO05D004106 1.0e-14 84.0 130 41.5
Lj1C21T4 Lonicera japonica HOM05D003529 ORTHO05D004106 1.3e-14 83.6 128 45.3
ClCG09G005350 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.7e-14 83.2 128 40.6
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.7e-14 83.2 152 38.8
PGSC0003DMG400007290 Solanum tuberosum HOM05D003529 ORTHO05D004106 2.2e-14 82.8 129 42.6
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 2.9e-14 82.4 129 41.9
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 2.9e-14 82.4 129 45.0
TAR362G0595 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.9e-14 82.4 131 39.7
unitig_578.g16622 Utricularia gibba HOM05D003529 ORTHO05D004106 2.9e-14 82.4 132 38.6
Aqoxy5G00808 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 3.8e-14 82.0 130 42.3
Peaxi162Scf00147g00094 Petunia axillaris HOM05D003529 ORTHO05D004106 3.8e-14 82.0 136 41.9
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 3.8e-14 82.0 130 40.8
unitig_85.g27172 Utricularia gibba HOM05D002424 ORTHO05D002640 3.8e-14 82.0 131 37.4
Potri.014G124900 Populus trichocarpa HOM05D003529 ORTHO05D004106 5.0e-14 81.6 133 39.8
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 8.5e-14 80.9 131 38.2
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 8.5e-14 80.9 142 40.1
BcaB02g08767 Brassica carinata HOM05D003529 ORTHO05D004106 1.5e-13 80.1 129 40.3
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 1.5e-13 80.1 133 36.1
FvH4_5g28940 Fragaria vesca HOM05D003529 ORTHO05D004106 1.5e-13 80.1 122 41.0
Sc17g0003040 Simmondsia chinensis HOM05D003529 ORTHO05D004106 1.5e-13 80.1 143 39.2
TAR365G1145 Trochodendron aralioides HOM05D003529 ORTHO05D004106 1.5e-13 80.1 140 39.3
Carub.0004s3022 Capsella rubella HOM05D003529 ORTHO05D004106 1.9e-13 79.7 134 41.8
MELO3C015948.2 Cucumis melo HOM05D003529 ORTHO05D004106 1.9e-13 79.7 126 41.3
DCAR_005779 Daucus carota HOM05D003529 ORTHO05D004106 3.2e-13 79.0 126 41.3
Eucgr.H01074 Eucalyptus grandis HOM05D003529 ORTHO05D004106 3.2e-13 79.0 136 40.4
PSO541G3234 Papaver somniferum HOM05D003529 ORTHO05D004106 3.2e-13 79.0 157 39.5
HanXRQChr01g0000901 Helianthus annuus HOM05D003529 ORTHO05D004106 4.2e-13 78.6 131 39.7
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 4.2e-13 78.6 123 41.5
CsaV3_7G029720 Cucumis sativus L. HOM05D003529 ORTHO05D004106 5.5e-13 78.2 126 38.9
PGR044G1489 Punica granatum HOM05D003529 ORTHO05D004106 5.5e-13 78.2 132 42.4
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 7.2e-13 77.8 132 39.4
Sed0025326 Sechium edule HOM05D003529 ORTHO05D004106 7.2e-13 77.8 132 40.2
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 7.2e-13 77.8 129 41.9
Eucgr.K03517 Eucalyptus grandis HOM05D003529 ORTHO05D004106 9.4e-13 77.4 136 36.0
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 9.4e-13 77.4 132 40.2
Prupe.8G268600 Prunus persica HOM05D003529 ORTHO05D004106 9.4e-13 77.4 138 39.1
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 9.4e-13 77.4 130 41.5
CDE05G0935 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.2e-12 77.0 129 38.8
Haze_04994 Corylus avellana HOM05D003529 ORTHO05D004106 1.2e-12 77.0 128 38.3
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 1.2e-12 77.0 124 42.7
Nitab4.5_0000116g0160 Nicotiana tabacum HOM05D003529 ORTHO05D004106 2.1e-12 76.3 131 39.7
EL10Ac7g17606 Beta vulgaris HOM05D003529 ORTHO05D004106 2.7e-12 75.9 144 38.2
PSO675G3938 Papaver somniferum HOM05D003529 ORTHO05D004106 2.7e-12 75.9 154 39.6
Sed0002432 Sechium edule HOM05D003529 ORTHO05D004106 2.7e-12 75.9 127 40.2
CAN.G668.31 Capsicum annuum HOM05D003529 ORTHO05D004106 4.7e-12 75.1 122 38.5
Solyc06g009770.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 4.7e-12 75.1 129 39.5
Haze_04995 Corylus avellana HOM05D003529 ORTHO05D004106 8.0e-12 74.3 128 38.3
TWI18G0446 Tripterygium wilfordii HOM05D003529 ORTHO05D004106 1.4e-11 73.6 123 42.3
BolC4t28764H Brassica oleracea HOM05D003529 ORTHO05D004106 5.2e-11 71.6 130 36.2
AUR62008739 Chenopodium quinoa HOM05D003529 ORTHO05D004106 5.2e-11 71.6 164 34.8
Lsat_1_v5_gn_8_165720 Lactuca sativa HOM05D003529 ORTHO05D004106 5.2e-11 71.6 127 40.9
Nitab4.5_0002454g0010 Nicotiana tabacum HOM05D003529 ORTHO05D004106 5.2e-11 71.6 131 37.4
Sopen06g004400 Solanum pennellii HOM05D003529 ORTHO05D004106 5.2e-11 71.6 128 39.1
Sc05g0003300 Simmondsia chinensis HOM05D003529 ORTHO05D004106 6.8e-11 71.2 127 37.8
FAN04G1108 Fragaria x ananassa HOM05D003529 ORTHO05D004106 3.4e-10 68.9 124 40.3
BcaB06g29439 Brassica carinata HOM05D003529 ORTHO05D004106 5.7e-10 68.2 124 33.9
TWI36G0365 Tripterygium wilfordii HOM05D003529 ORTHO05D004106 7.5e-10 67.8 126 36.5
HanXRQChr04g0114591 Helianthus annuus HOM05D003529 ORTHO05D004106 9.8e-10 67.4 115 39.1
HanXRQChr10g0285441 Helianthus annuus HOM05D003529 ORTHO05D004106 1.3e-09 67.0 128 38.3
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 1.7e-09 66.6 127 39.4
Nn1g06353 Nelumbo nucifera HOM05D003529 ORTHO05D004106 3.7e-09 65.5 109 41.3
A04p34950 Brassica napus HOM05D003529 ORTHO05D004106 6.3e-09 64.7 124 34.7
BraSC79t46685Z Brassica rapa HOM05D003529 ORTHO05D004106 6.3e-09 64.7 124 34.7
AUR62025498 Chenopodium quinoa HOM05D003529 ORTHO05D004106 1.4e-08 63.5 158 32.3
SHI19869 Sapria himalayana HOM05D000024 ORTHO05D000007 2.4e-08 62.8 133 34.6
ECA248G1804 Erigeron canadensis HOM05D003529 ORTHO05D004106 5.4e-08 61.6 131 38.2
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 5.4e-08 61.6 122 37.7
HanXRQChr04g0121431 Helianthus annuus HOM05D003529 ORTHO05D004106 7.0e-08 61.2 117 35.0
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 2.0e-07 59.7 136 31.6
Sabra16G0234400 Salix brachista HOM05D003529 ORTHO05D004106 2.0e-07 59.7 98 39.8
PSO063G5106 Papaver somniferum HOM05D003529 ORTHO05D004106 3.5e-07 58.9 136 39.0
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.9e-07 58.2 128 34.4
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 5.9e-07 58.2 120 33.3
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.0e-06 55.1 128 32.0
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 6.6e-06 54.7 120 35.8
Zm00001eb130390 Zea mays HOM05D003529 ORTHO05D004106 8.6e-06 54.3 140 28.6


User provided reference genes

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