Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22502_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 5.4e-38 160.6 87 100.0
Ca_29568_v3 Cicer arietinum L. HOM05D003577 ORTHO05D025039 5.4e-38 160.6 87 100.0
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 4.0e-25 117.9 86 76.7
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 2.0e-24 115.5 86 74.4
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 2.2e-23 112.1 86 68.6
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 2.9e-23 111.7 86 73.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.9e-23 111.7 86 73.3
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 8.3e-23 110.2 86 70.9
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 1.1e-22 109.8 86 69.8
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 1.1e-22 109.8 86 68.6
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.1e-22 109.8 86 70.9
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 5.4e-22 107.5 86 67.4
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 5.4e-22 107.5 86 67.4
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 7.1e-22 107.1 86 67.4
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 7.1e-22 107.1 86 67.4
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 9.2e-22 106.7 86 66.3
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 9.2e-22 106.7 86 66.3
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 68.6
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 67.4
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 67.4
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 67.4
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 67.4
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 67.4
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 66.3
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 1.2e-21 106.3 86 66.3
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 1.6e-21 105.9 86 66.3
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 1.6e-21 105.9 86 66.3
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 1.6e-21 105.9 86 68.6
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 1.6e-21 105.9 86 65.1
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 1.6e-21 105.9 86 66.3
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 2.1e-21 105.5 86 66.3
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 2.1e-21 105.5 86 62.8
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 66.3
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 66.3
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 65.1
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 66.3
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 65.1
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 2.7e-21 105.1 86 66.3
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 3.5e-21 104.8 86 66.3
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 4.6e-21 104.4 86 64.0
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 4.6e-21 104.4 86 67.4
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 4.6e-21 104.4 86 65.1
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 6.0e-21 104.0 86 65.1
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 6.0e-21 104.0 86 65.1
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 6.0e-21 104.0 86 67.4
Oeu062976.1 Olea europaea HOM05D003577 ORTHO05D004663 7.8e-21 103.6 86 62.8
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 7.8e-21 103.6 86 64.0
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 7.8e-21 103.6 86 65.1
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 1.0e-20 103.2 86 64.0
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.0e-20 103.2 86 66.3
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 1.0e-20 103.2 86 66.3
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 1.0e-20 103.2 86 64.0
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 1.3e-20 102.8 86 65.1
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 1.3e-20 102.8 86 66.3
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 1.3e-20 102.8 86 61.6
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 1.3e-20 102.8 86 65.1
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 62.8
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 62.8
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 64.0
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 65.1
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 65.1
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 62.8
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.7e-20 102.4 86 64.0
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.3e-20 102.1 86 65.1
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.3e-20 102.1 86 65.1
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 2.3e-20 102.1 86 64.0
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 2.3e-20 102.1 86 65.1
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 61.6
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 62.8
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Potri.008G135920 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 64.0
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 3.0e-20 101.7 86 65.1
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 3.9e-20 101.3 86 65.1
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 3.9e-20 101.3 86 65.1
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 3.9e-20 101.3 86 64.0
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 3.9e-20 101.3 86 62.8
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 5.1e-20 100.9 86 65.1
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 5.1e-20 100.9 86 61.6
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 5.1e-20 100.9 86 65.1
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 5.1e-20 100.9 86 65.1
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 6.6e-20 100.5 86 64.0
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 6.6e-20 100.5 86 60.5
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 6.6e-20 100.5 86 66.3
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 6.6e-20 100.5 86 61.6
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 8.6e-20 100.1 86 64.0
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 8.6e-20 100.1 86 64.0
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 8.6e-20 100.1 86 64.0
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 64.0
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 64.0
C07p48690 Brassica napus HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 64.0
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 64.0
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 62.8
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 1.1e-19 99.8 86 62.8
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 1.5e-19 99.4 86 61.6
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 1.5e-19 99.4 86 62.8
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 1.5e-19 99.4 86 64.0
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 1.5e-19 99.4 86 61.6
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 1.9e-19 99.0 86 62.8
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.9e-19 99.0 86 62.8
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 1.9e-19 99.0 86 61.6
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.5e-19 98.6 86 62.8
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.5e-19 98.6 86 61.6
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 2.5e-19 98.6 86 65.1
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 64.0
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 61.6
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 61.6
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 60.5
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 61.6
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 3.3e-19 98.2 86 61.6
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 4.3e-19 97.8 86 61.6
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 4.3e-19 97.8 86 60.5
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 4.3e-19 97.8 86 59.3
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 5.6e-19 97.4 84 63.1
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 5.6e-19 97.4 86 61.6
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 5.6e-19 97.4 86 61.6
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 7.3e-19 97.1 86 60.5
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 9.5e-19 96.7 86 60.5
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 9.5e-19 96.7 86 59.3
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 9.5e-19 96.7 86 59.3
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 9.5e-19 96.7 86 61.6
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 1.2e-18 96.3 86 60.5
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 1.6e-18 95.9 86 61.6
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 2.1e-18 95.5 86 57.0
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 2.8e-18 95.1 86 58.1
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 2.8e-18 95.1 86 60.5
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 2.8e-18 95.1 86 59.3
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 3.6e-18 94.7 86 60.5
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 3.6e-18 94.7 86 61.6
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 59.3
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 59.3
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 59.3
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 61.6
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 59.3
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 4.7e-18 94.4 86 55.8
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 6.2e-18 94.0 86 62.8
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 6.2e-18 94.0 86 58.1
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 6.2e-18 94.0 86 64.0
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.1e-17 93.2 86 58.1
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 1.8e-17 92.4 86 57.0
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.4e-17 92.0 86 55.8
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 3.1e-17 91.7 86 61.6
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 3.1e-17 91.7 86 58.1
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 4.0e-17 91.3 86 61.6
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 6.8e-17 90.5 86 60.5
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 8.9e-17 90.1 86 54.7
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 1.5e-16 89.4 80 62.5
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.5e-16 89.4 87 57.5
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 2.0e-16 89.0 86 57.0
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 3.4e-16 88.2 86 54.7
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 3.4e-16 88.2 86 57.0
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 3.4e-16 88.2 86 58.1
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 5.8e-16 87.4 85 55.3
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 5.8e-16 87.4 86 55.8
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 7.6e-16 87.0 86 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 9.9e-16 86.7 86 53.5
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 9.9e-16 86.7 86 53.5
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 1.7e-15 85.9 86 52.3
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.2e-15 85.5 85 50.6
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 3.8e-15 84.7 86 53.5
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 2.4e-14 82.0 86 51.2
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.7e-13 78.6 82 51.2
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.3e-12 76.3 84 46.4
VMungo1383G3195 Vigna mungo HOM05D003577 ORTHO05D025039 4.3e-11 71.2 60 60.0
FAN25G2773 Fragaria x ananassa HOM05D003577 ORTHO05D025039 1.6e-10 69.3 67 56.7
FAN16G1205 Fragaria x ananassa HOM05D003577 ORTHO05D025039 6.2e-10 67.4 64 57.8
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 8.1e-10 67.0 85 44.7
Prupe.6G054700 Prunus persica HOM05D003577 ORTHO05D044351 1.1e-09 66.6 53 62.3
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.1e-09 66.6 87 44.8
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 9.0e-09 63.5 86 46.5
Ca_13887_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 2.9e-07 58.5 45 75.6
Ca_20701_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 2.9e-07 58.5 45 75.6


User provided reference genes

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