Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 8.2e-51 203.4 99 100.0
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 1.1e-50 203.0 99 99.0
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.2e-49 199.5 99 97.0
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 3.5e-49 198.0 99 97.0
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 6.5e-48 193.7 99 93.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 6.5e-48 193.7 99 93.9
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 1.5e-47 192.6 99 92.9
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 4.2e-47 191.0 99 91.9
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 7.2e-47 190.3 99 92.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.1e-46 188.7 99 90.9
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 1.8e-45 185.7 99 88.9
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 3.0e-45 184.9 98 88.8
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 6.8e-45 183.7 99 86.9
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 8.8e-45 183.3 112 82.1
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 87.9
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 87.9
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 87.9
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 87.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 86.9
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 86.9
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 3.4e-44 181.4 99 87.9
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 87.9
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 86.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 85.9
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 85.9
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 85.9
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 85.9
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 86.9
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 85.9
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 84.8
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 85.9
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 86.9
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 2.2e-43 178.7 99 84.8
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 2.2e-43 178.7 99 85.9
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 2.8e-43 178.3 99 86.9
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 2.8e-43 178.3 99 84.8
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 84.8
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 83.8
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 83.8
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 4.8e-43 177.6 99 84.8
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 6.3e-43 177.2 99 84.8
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 82.8
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 1.4e-42 176.0 99 84.8
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.4e-42 176.0 97 86.6
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.4e-42 176.0 99 86.9
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 83.8
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 84.8
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 83.8
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 2.4e-42 175.3 99 85.9
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 2.4e-42 175.3 99 84.8
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 85.9
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 85.9
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 85.9
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 85.9
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 83.8
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 82.8
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 82.8
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 9.1e-42 173.3 99 82.8
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 84.8
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 4.5e-41 171.0 99 82.8
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 5.9e-41 170.6 99 81.8
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 7.7e-41 170.2 106 79.2
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 1.3e-40 169.5 99 81.8
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 1.3e-40 169.5 99 81.8
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 2.3e-40 168.7 99 80.8
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.9e-39 165.6 99 78.8
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.9e-39 165.6 99 79.8
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 2.8e-38 161.8 99 77.8
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 3.6e-38 161.4 99 76.8
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 3.6e-38 161.4 99 75.8
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.4e-37 159.5 88 86.4
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 1.8e-37 159.1 95 78.9
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.3e-37 158.7 99 75.8
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 77.9
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 3.0e-37 158.3 99 73.7
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 4.0e-37 157.9 95 77.9
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 4.0e-37 157.9 95 77.9
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 77.9
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 77.9
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 77.9
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 77.9
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 77.9
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 76.8
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 76.8
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 76.8
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 76.8
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 76.8
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 1.5e-36 156.0 99 71.7
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 9.8e-36 153.3 95 75.8
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 3.7e-35 151.4 99 70.7
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 3.7e-35 151.4 142 58.5
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 4.9e-35 151.0 75 94.7
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.1e-34 149.8 99 66.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 1.4e-34 149.4 150 55.3
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 2.4e-34 148.7 72 100.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 7.0e-34 147.1 94 76.6
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 2.7e-33 145.2 87 75.9
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.3e-32 142.9 98 64.3
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.9e-32 141.7 72 93.1
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 4.7e-30 134.4 72 87.5
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.4e-29 132.9 99 68.7
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 1.8e-29 132.5 76 81.6
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.3e-29 132.1 150 49.3
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 2.3e-29 132.1 86 73.3
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 4.0e-29 131.3 73 84.9
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 4.0e-29 131.3 72 84.7
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 4.0e-29 131.3 72 83.3
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 6.8e-29 130.6 75 81.3
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 1.5e-28 129.4 73 80.8
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 2.6e-28 128.6 100 62.0
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 9.2e-26 120.2 99 58.6
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 3.5e-25 118.2 62 87.1
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.0e-24 116.7 74 71.6
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 3.9e-24 114.8 92 57.6
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 5.0e-24 114.4 72 72.2
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 5.0e-24 114.4 73 72.6
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 8.6e-24 113.6 61 85.2
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 1.9e-23 112.5 69 72.5
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 5.6e-23 110.9 94 57.4
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.6e-22 109.4 75 70.7
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 8.0e-22 107.1 62 87.1
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 3.1e-21 105.1 58 82.8
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.5e-20 102.8 91 61.5
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 7.8e-17 90.5 93 47.3
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 1.1e-13 80.1 42 88.1
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 6.4e-11 70.9 37 94.6
Pp3c1_36090 Physcomitrium patens HOM05D000212 ORTHO05D000225 1.9e-07 59.3 109 33.9
TWI09G0972 Tripterygium wilfordii HOM05D000212 ORTHO05D000225 7.3e-07 57.4 110 30.9
CBR_g21767 Chara braunii HOM05D000212 ORTHO05D000225 9.5e-07 57.0 111 33.3
MBI05_g23376_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D000225 2.8e-06 55.5 106 34.0
SEGI_37577 Sequoiadendron giganteum HOM05D000212 ORTHO05D000225 3.6e-06 55.1 112 33.9
SMO172G0009 Selaginella moellendorffii HOM05D000212 ORTHO05D000225 4.7e-06 54.7 107 34.6
COL.COLO4_26111 Corchorus olitorius HOM05D000212 ORTHO05D000225 8.1e-06 53.9 105 31.4


User provided reference genes

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