Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29535_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 1.6e-83 312.8 161 100.0
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 6.6e-74 280.8 161 88.2
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 7.6e-70 267.3 161 83.9
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.7e-66 256.1 161 78.9
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 3.6e-64 248.4 161 80.1
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 2.1e-59 232.6 161 75.8
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 6.0e-59 231.1 161 72.7
Ca_14866_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 5.3e-55 218.0 115 100.0
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 5.4e-52 208.0 161 64.0
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 7.1e-52 207.6 161 64.6
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 7.1e-52 207.6 161 64.0
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 9.3e-52 207.2 161 64.6
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.2e-51 206.8 159 65.4
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 1.6e-51 206.5 161 63.4
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 1.6e-51 206.5 161 63.4
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 2.1e-51 206.1 161 64.0
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 2.7e-51 205.7 161 62.7
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 2.7e-51 205.7 161 62.1
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 3.5e-51 205.3 157 65.0
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 3.5e-51 205.3 161 63.4
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 4.6e-51 204.9 161 62.1
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 6.0e-51 204.5 161 63.4
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 6.0e-51 204.5 161 63.4
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.0e-50 203.8 161 62.7
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 1.0e-50 203.8 161 62.7
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 1.0e-50 203.8 161 62.7
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 1.0e-50 203.8 161 64.0
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.3e-50 203.4 161 62.7
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 1.8e-50 203.0 157 63.7
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 2.3e-50 202.6 161 62.7
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 3.0e-50 202.2 157 64.3
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 3.0e-50 202.2 161 62.7
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 3.0e-50 202.2 157 63.1
QL04p022451 Quercus lobata HOM05D003429 ORTHO05D003873 3.0e-50 202.2 160 62.5
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 3.9e-50 201.8 161 62.7
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 3.9e-50 201.8 161 61.5
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 3.9e-50 201.8 157 63.1
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 5.1e-50 201.4 161 61.5
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 5.1e-50 201.4 161 61.5
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 5.1e-50 201.4 161 61.5
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 5.1e-50 201.4 161 61.5
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 6.7e-50 201.1 161 61.5
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 8.7e-50 200.7 161 60.9
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 8.7e-50 200.7 161 60.9
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 8.7e-50 200.7 161 62.7
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 8.7e-50 200.7 161 61.5
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 1.1e-49 200.3 161 62.1
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.1e-49 200.3 161 63.4
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.1e-49 200.3 161 62.7
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.5e-49 199.9 161 62.7
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.5e-49 199.9 157 61.8
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 1.5e-49 199.9 163 62.0
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 1.9e-49 199.5 161 61.5
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 2.5e-49 199.1 161 60.2
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 3.3e-49 198.7 161 61.5
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.3e-49 198.4 161 59.6
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 4.3e-49 198.4 161 60.9
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 7.4e-49 197.6 161 59.0
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 1.3e-48 196.8 161 59.6
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 1.3e-48 196.8 161 59.6
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.6e-48 196.4 161 62.1
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 2.8e-48 195.7 161 60.9
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 2.8e-48 195.7 160 60.0
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 3.7e-48 195.3 157 61.8
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 3.7e-48 195.3 161 59.0
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 3.7e-48 195.3 157 59.9
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 3.7e-48 195.3 157 59.9
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 6.2e-48 194.5 161 58.4
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 6.2e-48 194.5 161 60.2
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 6.2e-48 194.5 161 60.2
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 6.2e-48 194.5 165 60.0
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 6.2e-48 194.5 161 59.0
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 8.1e-48 194.1 161 59.6
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 8.1e-48 194.1 161 60.2
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 1.1e-47 193.7 161 60.2
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 1.1e-47 193.7 168 58.3
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 1.1e-47 193.7 160 58.8
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 1.1e-47 193.7 168 58.9
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 1.1e-47 193.7 160 58.8
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.4e-47 193.4 157 61.1
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 3.1e-47 192.2 168 57.7
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 4.0e-47 191.8 161 60.2
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 5.3e-47 191.4 161 59.6
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.2e-46 190.3 167 57.5
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.2e-46 190.3 161 58.4
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 1.2e-46 190.3 157 57.3
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 1.5e-46 189.9 161 57.8
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.0e-46 189.5 161 57.8
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 2.0e-46 189.5 160 57.5
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 2.0e-46 189.5 161 58.4
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 2.0e-46 189.5 161 58.4
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.6e-46 189.1 161 57.8
HPP92_028715 Vanilla planifolia HOM05D003429 ORTHO05D003873 2.6e-46 189.1 161 60.2
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 7.6e-46 187.6 161 58.4
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 9.9e-46 187.2 175 54.9
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 1.3e-45 186.8 161 57.8
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 2.9e-45 185.7 167 57.5
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 2.9e-45 185.7 161 57.1
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 3.8e-45 185.3 161 57.1
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 4.2e-44 181.8 159 57.9
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 7.1e-44 181.0 196 51.0
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 9.3e-44 180.6 177 54.8
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.2e-43 180.3 156 56.4
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 7.9e-43 177.6 194 50.5
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 7.9e-43 177.6 161 57.8
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 1.8e-42 176.4 192 48.4
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 3.3e-41 172.2 161 53.4
GSVIVG01021243001 Vitis vinifera HOM05D003429 ORTHO05D003873 9.6e-41 170.6 161 54.7
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 8.2e-40 167.5 170 49.4
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 4.0e-39 165.2 157 50.3
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.0e-39 165.2 132 62.1
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 9.0e-39 164.1 228 42.1
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.5e-38 163.3 161 50.9
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 3.4e-38 162.2 161 50.9
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.8e-38 161.4 136 59.6
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.1e-36 157.1 161 50.3
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 1.8e-34 149.8 160 50.0
AUR62018434 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.1e-34 148.3 136 54.4
VMungo0720G3126 Vigna mungo HOM05D003429 ORTHO05D003873 5.1e-34 148.3 128 64.8
Oeu008545.1 Olea europaea HOM05D003429 ORTHO05D003873 2.5e-33 146.0 118 60.2
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.8e-31 139.8 123 58.5
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 4.1e-31 138.7 114 59.6
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 4.1e-31 138.7 114 59.6
BcaC06g32583 Brassica carinata HOM05D000478 ORTHO05D000345 1.5e-30 136.7 113 58.4
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 2.0e-30 136.3 114 57.9
Cre02.g141506 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 3.4e-30 135.6 175 44.6
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 1.0e-29 134.0 158 44.9
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.3e-29 133.7 109 60.6
Nitab4.5_0000211g0050 Nicotiana tabacum HOM05D003429 ORTHO05D003873 8.5e-29 131.0 87 70.1
Nitab4.5_0002094g0070 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.9e-28 129.8 87 69.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 5.5e-28 128.3 114 55.3
Nn1g02902 Nelumbo nucifera HOM05D003429 ORTHO05D003873 9.3e-28 127.5 113 57.5
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 1.8e-26 123.2 103 58.3
SHI25005 Sapria himalayana HOM05D003429 ORTHO05D003873 8.2e-24 114.4 125 48.0
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 7.2e-20 101.3 98 55.1
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 7.2e-20 101.3 98 55.1
Lsat_1_v5_gn_8_67461 Lactuca sativa HOM05D003429 ORTHO05D003873 1.0e-18 97.4 103 52.4
Manes.04G056744 Manihot esculenta HOM05D003429 ORTHO05D003873 1.8e-15 86.7 71 62.0
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 6.9e-15 84.7 71 57.7
Haze_02953 Corylus avellana HOM05D003429 ORTHO05D003873 2.0e-14 83.2 75 54.7
Manes.13G089800 Manihot esculenta HOM05D003429 ORTHO05D003873 1.0e-13 80.9 60 63.3
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 6.5e-13 78.2 135 35.6
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.5e-12 75.1 63 55.6
FAN10G3011 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.3e-10 69.7 46 69.6
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 1.3e-08 63.9 159 28.9
Os01g0278200 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 3.7e-08 62.4 45 60.0
Ah.04g150250 Amaranthus hybridus HOM05D003429 ORTHO05D003873 4.8e-08 62.0 59 55.9
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 2.4e-07 59.7 123 35.8
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 9.1e-07 57.8 159 24.5


User provided reference genes

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