Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.3e-151 538.9 276 100.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.3e-21 107.8 283 29.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.7e-21 107.5 285 28.8
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.2e-21 107.1 284 28.9
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.9e-21 106.7 280 28.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.9e-20 104.0 282 28.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.5e-20 103.6 276 29.7
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.5e-20 103.6 287 28.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-20 103.2 283 28.3
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 5.5e-20 102.4 283 27.9
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 5.5e-20 102.4 282 27.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 5.5e-20 102.4 282 27.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.5e-20 102.4 283 27.9
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 7.2e-20 102.1 281 28.5
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-19 101.3 282 27.7
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.1e-19 100.5 284 28.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.1e-19 100.5 279 29.0
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.7e-19 100.1 281 27.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.7e-19 100.1 279 28.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.7e-19 100.1 259 29.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.6e-19 99.8 281 27.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.6e-19 99.8 283 28.3
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.7e-19 99.4 279 28.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.1e-19 99.0 283 29.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 6.1e-19 99.0 278 28.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 6.1e-19 99.0 280 29.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.0e-19 98.6 279 28.0
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 8.0e-19 98.6 288 27.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 8.0e-19 98.6 280 27.5
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.0e-18 98.2 279 29.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.0e-18 98.2 280 29.3
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.4e-18 97.8 257 28.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.4e-18 97.8 279 28.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.3e-18 97.1 282 29.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.3e-18 97.1 282 29.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.3e-18 97.1 282 28.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.3e-18 97.1 281 28.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.3e-18 97.1 280 28.9
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.0e-18 96.7 282 28.7
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 3.0e-18 96.7 286 27.6
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.0e-18 96.7 286 27.3
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.0e-18 96.7 283 29.3
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 4.0e-18 96.3 285 29.5
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.0e-18 96.3 282 28.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 5.2e-18 95.9 282 28.7
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 6.7e-18 95.5 280 28.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.7e-18 95.5 285 29.5
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 8.8e-18 95.1 285 27.0
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 8.8e-18 95.1 246 30.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.2e-17 94.7 282 27.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.2e-17 94.7 278 28.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.2e-17 94.7 285 28.1
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.2e-17 94.7 285 28.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.2e-17 94.7 285 28.4
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.5e-17 94.4 279 28.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.5e-17 94.4 278 28.1
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-17 94.0 282 28.0
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.0e-17 94.0 279 28.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.0e-17 94.0 279 26.9
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.0e-17 94.0 274 29.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.0e-17 94.0 278 28.1
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.0e-17 94.0 250 29.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.6e-17 93.6 282 28.0
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.6e-17 93.6 285 28.8
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.6e-17 93.6 278 27.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.6e-17 93.6 292 26.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.6e-17 93.6 281 28.1
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 2.6e-17 93.6 288 27.8
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.6e-17 93.6 289 27.7
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.6e-17 93.6 239 27.6
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.6e-17 93.6 280 27.9
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.3e-17 93.2 278 29.1
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.3e-17 93.2 283 27.2
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.3e-17 93.2 285 27.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.4e-17 92.8 286 27.3
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.7e-17 92.4 282 27.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 5.7e-17 92.4 284 27.5
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 5.7e-17 92.4 285 27.4
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 5.7e-17 92.4 293 29.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.5e-17 92.0 286 27.3
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 7.5e-17 92.0 282 28.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 7.5e-17 92.0 282 28.0
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 7.5e-17 92.0 282 28.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 7.5e-17 92.0 279 28.0
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.5e-17 92.0 231 29.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 9.7e-17 91.7 287 28.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.7e-17 91.7 280 26.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 9.7e-17 91.7 285 27.7
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 9.7e-17 91.7 289 26.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.3e-16 91.3 237 29.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-16 91.3 280 27.1
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.7e-16 90.9 278 27.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.7e-16 90.9 275 29.5
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-16 90.5 282 27.7
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.2e-16 90.5 280 27.5
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.2e-16 90.5 232 29.3
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.2e-16 90.5 282 26.6
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.8e-16 90.1 282 27.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.8e-16 90.1 282 27.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.8e-16 90.1 282 27.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.8e-16 90.1 282 27.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.8e-16 90.1 230 29.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 3.7e-16 89.7 279 28.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.7e-16 89.7 279 27.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.8e-16 89.4 288 27.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 4.8e-16 89.4 285 27.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.8e-16 89.4 285 27.7
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 6.3e-16 89.0 276 25.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 6.3e-16 89.0 285 27.0
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.3e-16 89.0 277 27.8
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.3e-16 89.0 277 27.8
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.3e-16 89.0 234 27.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 6.3e-16 89.0 281 27.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 6.3e-16 89.0 187 33.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.3e-16 89.0 283 27.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-15 88.2 284 27.8
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.1e-15 88.2 283 27.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.1e-15 88.2 283 27.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.8e-15 87.4 285 26.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.8e-15 87.4 279 27.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 1.8e-15 87.4 268 27.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.8e-15 87.4 274 27.0
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.4e-15 87.0 282 26.6
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.4e-15 87.0 283 26.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.4e-15 87.0 289 26.3
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.1e-15 86.3 287 27.2
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.1e-15 86.3 277 27.4
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 5.3e-15 85.9 307 26.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 7.0e-15 85.5 288 27.1
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 7.0e-15 85.5 279 26.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.6e-14 84.3 241 28.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.6e-14 84.3 286 27.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.0e-14 84.0 287 26.8
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 2.7e-14 83.6 280 26.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.5e-14 83.2 279 28.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.9e-14 82.4 197 31.5
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.9e-13 80.1 218 28.4
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.1e-12 78.2 290 27.6
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 9.4e-12 75.1 198 30.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.2e-11 74.7 187 30.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.7e-11 73.6 186 32.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 7.5e-09 65.5 151 33.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 9.8e-09 65.1 151 33.1


User provided reference genes

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