Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.5e-115 417.9 208 100.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 4.4e-30 135.6 199 40.2
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.9e-29 132.1 221 39.4
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.6e-27 125.6 199 34.7
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 6.0e-27 125.2 223 37.2
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.0e-26 124.4 203 36.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.0e-26 124.4 203 36.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.0e-26 124.4 203 36.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-26 124.0 203 36.5
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.3e-26 123.2 203 36.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.3e-26 123.2 201 34.8
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 8.7e-26 121.3 203 35.0
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 8.7e-26 121.3 201 34.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 8.7e-26 121.3 191 37.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.1e-25 120.9 203 35.0
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.5e-25 120.6 199 37.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.5e-25 120.6 199 35.7
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.9e-25 120.2 193 37.3
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.5e-25 119.8 199 35.7
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.5e-25 119.8 189 37.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.3e-25 119.4 196 35.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.3e-25 119.4 201 34.8
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.3e-25 119.4 203 35.0
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 3.3e-25 119.4 198 36.4
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.3e-25 119.0 199 36.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.3e-25 119.0 195 35.9
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 5.6e-25 118.6 192 37.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 5.6e-25 118.6 191 38.2
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.6e-25 118.6 203 36.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 9.6e-25 117.9 192 36.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.2e-24 117.5 197 36.0
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.2e-24 117.5 201 33.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-24 117.5 196 35.2
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.2e-24 117.5 201 35.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.6e-24 117.1 199 37.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.6e-24 117.1 192 37.0
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.6e-24 117.1 203 35.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.1e-24 116.7 201 35.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.1e-24 116.7 201 35.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 2.1e-24 116.7 197 36.5
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 2.8e-24 116.3 228 35.5
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.8e-24 116.3 192 36.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.8e-24 116.3 190 35.8
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.8e-24 116.3 193 35.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.8e-24 116.3 193 37.3
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 3.6e-24 115.9 209 34.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.6e-24 115.9 199 38.2
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-24 115.9 227 33.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.6e-24 115.9 192 35.9
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.6e-24 115.9 192 36.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.6e-24 115.9 192 36.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.6e-24 115.9 192 36.5
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.6e-24 115.9 193 36.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 4.7e-24 115.5 199 36.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 4.7e-24 115.5 199 36.7
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 4.7e-24 115.5 194 36.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 4.7e-24 115.5 201 33.8
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.2e-24 115.2 225 34.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.1e-24 114.8 210 34.3
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 8.1e-24 114.8 192 38.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-23 114.4 208 34.1
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.1e-23 114.4 208 34.1
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.1e-23 114.4 201 37.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.1e-23 114.4 195 35.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.4e-23 114.0 197 36.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.4e-23 114.0 200 34.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.4e-23 114.0 192 35.4
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.4e-23 114.0 199 38.2
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.4e-23 114.0 199 35.7
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.4e-23 114.0 196 34.7
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.8e-23 113.6 223 34.1
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.8e-23 113.6 199 34.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.8e-23 113.6 194 37.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.8e-23 113.6 198 35.9
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.8e-23 113.6 199 35.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.8e-23 113.6 194 37.1
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.8e-23 113.6 199 36.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.8e-23 113.6 195 36.9
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.4e-23 113.2 192 37.0
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.1e-23 112.8 196 34.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 3.1e-23 112.8 194 35.1
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.0e-23 112.5 194 36.6
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.0e-23 112.5 194 34.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.0e-23 112.5 194 35.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 4.0e-23 112.5 194 35.1
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.0e-23 112.5 192 37.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 4.0e-23 112.5 200 35.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.0e-23 112.5 194 35.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.9e-23 111.7 192 34.9
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.9e-23 111.7 196 33.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.0e-23 111.3 200 33.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.0e-23 111.3 200 33.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 9.0e-23 111.3 192 36.5
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 9.0e-23 111.3 206 35.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.2e-22 110.9 192 34.9
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.5e-22 110.5 192 34.9
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.5e-22 110.5 210 34.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.5e-22 110.5 197 35.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.5e-22 110.5 192 36.5
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.5e-22 110.5 197 37.1
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.0e-22 110.2 194 36.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.0e-22 110.2 195 34.9
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.0e-22 110.2 193 36.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.4e-22 109.4 192 34.4
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.4e-22 109.4 194 35.6
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-22 109.0 193 34.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 4.4e-22 109.0 196 37.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 7.6e-22 108.2 179 34.6
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 7.6e-22 108.2 194 35.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 9.9e-22 107.8 192 33.9
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.3e-21 107.5 199 35.2
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.2e-21 106.7 196 34.2
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.9e-21 105.5 194 35.6
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.9e-21 105.5 211 34.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.9e-21 105.5 175 35.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.4e-21 104.8 221 32.6
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-20 104.4 226 32.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-20 104.4 211 32.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.9e-20 103.6 171 36.8
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 5.4e-20 102.1 171 34.5
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.5e-19 99.4 174 33.3
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.5e-19 99.4 169 35.5
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.0e-19 98.6 128 39.8
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.3e-18 96.7 102 42.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.3e-18 96.7 171 35.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.3e-18 96.7 178 33.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.0e-18 96.3 146 35.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.0e-18 96.3 227 30.8
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.1e-18 95.5 116 40.5
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.9e-17 93.6 165 36.4
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.9e-17 93.6 182 33.5
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.5e-17 93.2 128 38.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-16 90.5 175 34.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-15 87.4 175 30.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.3e-15 85.5 159 32.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.0e-15 84.7 198 29.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.0e-14 83.6 145 34.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 7.6e-14 81.6 122 36.9
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.9e-13 79.7 134 33.6
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-12 77.8 170 34.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 7.9e-11 71.6 148 31.8
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.0e-10 71.2 76 43.4
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.0e-10 71.2 76 43.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 5.1e-10 68.9 84 39.3
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 9.6e-09 64.7 65 44.6
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.8e-08 62.4 135 31.9
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.1e-08 61.6 65 43.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-07 60.8 65 43.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.1e-07 59.7 65 41.5
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.0e-07 59.3 65 41.5


User provided reference genes

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