Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.0e-70 270.0 140 100.0
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.6e-07 60.1 42 71.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 69.0
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 2.1e-07 59.7 42 71.4
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.7e-07 59.3 42 71.4
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.7e-07 59.3 42 71.4
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 69.0
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 69.0
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 71.4
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 69.0
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 71.4
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 71.4
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 71.4
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 3.6e-07 58.9 42 71.4
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 69.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.6e-07 58.5 42 71.4
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 71.4
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 71.4
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 71.4
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 69.0
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 69.0
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 69.0
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 6.1e-07 58.2 42 69.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 7.9e-07 57.8 42 69.0
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 7.9e-07 57.8 42 69.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 66.7
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 66.7
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 69.0
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 66.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 66.7
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 66.7
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 71.4
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 71.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.3e-06 57.0 42 69.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.8e-06 56.6 42 66.7
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.8e-06 56.6 42 66.7
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.8e-06 56.6 42 69.0
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 69.0
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.3e-06 56.2 42 66.7
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 3.0e-06 55.8 42 66.7
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 3.0e-06 55.8 42 66.7
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.9e-06 55.5 42 66.7
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 5.1e-06 55.1 42 64.3
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 5.1e-06 55.1 42 64.3
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 5.1e-06 55.1 42 66.7
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.7e-06 54.7 42 64.3
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.7e-06 54.7 42 64.3
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 6.7e-06 54.7 42 66.7
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 6.7e-06 54.7 41 70.7
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 8.7e-06 54.3 43 65.1
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 8.7e-06 54.3 43 65.1


User provided reference genes

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