Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28902_v3 Cicer arietinum L. HOM05D003293 ORTHO05D149213 7.7e-65 250.4 130 100.0
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 5.2e-21 104.8 117 44.4
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 4.4e-20 101.7 123 43.1
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 2.1e-17 92.8 110 40.9
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.1e-17 92.8 114 39.5
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.5e-17 92.0 121 39.7
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 4.6e-17 91.7 116 40.5
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 3.0e-16 89.0 116 39.7
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 3.9e-16 88.6 109 43.1
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 8.1e-14 80.9 112 37.5
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 3.1e-13 79.0 112 36.6
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 6.9e-13 77.8 94 42.6
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.2e-12 77.0 99 38.4
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.5e-12 76.6 88 44.3
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 1.5e-12 76.6 88 45.5
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 2.0e-12 76.3 99 38.4
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 2.6e-12 75.9 94 41.5
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 3.4e-12 75.5 100 37.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 4.4e-12 75.1 108 38.0
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 7.6e-12 74.3 108 38.0
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 9.9e-12 73.9 101 40.6
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.3e-11 73.6 100 37.0
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.3e-11 73.6 100 37.0
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.3e-11 73.6 100 37.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 1.3e-11 73.6 99 39.4
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.7e-11 73.2 100 36.0
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.7e-11 73.2 81 43.2
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.7e-11 73.2 115 35.7
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 2.2e-11 72.8 101 36.6
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.2e-11 72.8 88 39.8
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.9e-11 72.4 103 36.9
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 2.9e-11 72.4 105 38.1
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.9e-11 72.4 94 38.3
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.9e-11 72.4 87 40.2
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 2.9e-11 72.4 81 43.2
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 3.8e-11 72.0 105 36.2
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 3.8e-11 72.0 103 36.9
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 4.9e-11 71.6 133 32.3
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 4.9e-11 71.6 101 35.6
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 4.9e-11 71.6 81 40.7
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 6.4e-11 71.2 94 40.4
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.4e-11 71.2 100 36.0
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.4e-11 71.2 100 36.0
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 6.4e-11 71.2 80 40.0
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 6.4e-11 71.2 80 40.0
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 6.4e-11 71.2 88 40.9
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 8.4e-11 70.9 87 39.1
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.1e-10 70.5 87 39.1
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.1e-10 70.5 81 42.0
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 1.1e-10 70.5 103 36.9
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 1.1e-10 70.5 88 42.0
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.4e-10 70.1 87 37.9
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.4e-10 70.1 81 39.5
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 1.4e-10 70.1 81 39.5
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.9e-10 69.7 94 39.4
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.9e-10 69.7 110 36.4
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 1.9e-10 69.7 103 37.9
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.9e-10 69.7 94 36.2
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 1.9e-10 69.7 109 34.9
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 1.9e-10 69.7 94 39.4
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.4e-10 69.3 93 38.7
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 3.2e-10 68.9 88 42.0
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 3.2e-10 68.9 88 40.9
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 3.2e-10 68.9 100 33.0
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 3.2e-10 68.9 94 38.3
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 3.2e-10 68.9 90 38.9
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.2e-10 68.6 93 38.7
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 4.2e-10 68.6 115 31.3
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 4.2e-10 68.6 115 32.2
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 4.2e-10 68.6 113 31.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 5.4e-10 68.2 121 33.1
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 5.4e-10 68.2 100 34.0
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 5.4e-10 68.2 109 33.0
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 9.3e-10 67.4 78 44.9
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 9.3e-10 67.4 94 37.2
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 9.3e-10 67.4 81 39.5
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 9.3e-10 67.4 81 39.5
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 1.2e-09 67.0 115 31.3
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.2e-09 67.0 93 37.6
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.2e-09 67.0 93 37.6
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.2e-09 67.0 109 33.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.6e-09 66.6 94 37.2
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.6e-09 66.6 110 36.4
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 1.6e-09 66.6 94 34.0
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 35.5
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.1e-09 66.2 78 43.6
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.1e-09 66.2 93 36.6
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 2.7e-09 65.9 115 33.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.7e-09 65.9 93 36.6
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 2.7e-09 65.9 94 33.0
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 2.7e-09 65.9 78 39.7
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 2.7e-09 65.9 78 39.7
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.5e-09 65.5 93 36.6
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 3.5e-09 65.5 115 31.3
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 4.6e-09 65.1 87 34.5
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 4.6e-09 65.1 105 36.2
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 4.6e-09 65.1 93 35.5
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 6.0e-09 64.7 92 39.1
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 6.0e-09 64.7 78 41.0
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 6.0e-09 64.7 100 34.0
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 6.0e-09 64.7 100 33.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 6.0e-09 64.7 78 39.7
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 7.8e-09 64.3 93 34.4
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 7.8e-09 64.3 93 34.4
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 7.8e-09 64.3 78 39.7
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 7.8e-09 64.3 80 38.8
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 7.8e-09 64.3 109 32.1
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 7.8e-09 64.3 100 34.0
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.0e-08 63.9 94 31.9
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.0e-08 63.9 78 39.7
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 1.0e-08 63.9 78 39.7
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.0e-08 63.9 78 39.7
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 1.0e-08 63.9 78 41.0
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.0e-08 63.9 94 35.1
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.0e-08 63.9 80 38.8
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.0e-08 63.9 80 38.8
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.3e-08 63.5 78 39.7
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.3e-08 63.5 100 33.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.3e-08 63.5 93 34.4
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.3e-08 63.5 94 31.9
COL.COLO4_09217 Corchorus olitorius HOM05D003293 ORTHO05D022256 1.3e-08 63.5 78 39.7
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 1.3e-08 63.5 111 34.2
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.3e-08 63.5 100 33.0
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.3e-08 63.5 93 34.4
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.7e-08 63.2 94 31.9
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.7e-08 63.2 94 35.1
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.3e-08 62.8 78 39.7
Nitab4.5_0003468g0040 Nicotiana tabacum HOM05D003293 ORTHO05D022256 2.3e-08 62.8 78 41.0
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 3.0e-08 62.4 94 30.9
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 3.0e-08 62.4 88 36.4
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.9e-08 62.0 94 33.0
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 3.9e-08 62.0 78 38.5
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 5.1e-08 61.6 78 38.5
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 6.6e-08 61.2 87 34.5
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 6.6e-08 61.2 78 41.0
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 8.7e-08 60.8 100 30.0
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.9e-07 59.7 80 36.2
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 7.3e-07 57.8 74 40.5
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.3e-07 57.8 95 34.7
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 9.6e-07 57.4 95 34.7
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.3e-06 57.0 95 33.7
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 4.8e-06 55.1 59 42.4
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 8.1e-06 54.3 70 41.4


User provided reference genes

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