Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.7e-88 328.6 156 100.0
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 4.1e-28 128.6 151 44.4
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 2.0e-27 126.3 149 43.0
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 3.4e-27 125.6 149 43.0
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 3.4e-27 125.6 151 43.7
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 4.5e-27 125.2 149 42.3
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 7.7e-27 124.4 151 43.0
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 1.0e-26 124.0 149 43.6
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 1.0e-26 124.0 149 42.3
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.0e-26 124.0 149 43.6
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.0e-26 124.0 149 43.0
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.3e-26 123.6 149 43.6
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 1.3e-26 123.6 150 41.3
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 1.3e-26 123.6 149 41.6
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 1.7e-26 123.2 152 41.4
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 1.7e-26 123.2 152 41.4
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 2.2e-26 122.9 149 42.3
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 2.2e-26 122.9 149 43.0
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 2.9e-26 122.5 149 43.0
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 2.9e-26 122.5 152 42.1
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 2.9e-26 122.5 149 41.6
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 2.9e-26 122.5 149 43.0
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 2.9e-26 122.5 149 44.3
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 2.9e-26 122.5 151 42.4
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 5.0e-26 121.7 144 43.1
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 6.5e-26 121.3 149 41.6
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 6.5e-26 121.3 149 42.3
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 6.5e-26 121.3 149 40.9
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 6.5e-26 121.3 149 40.9
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 8.5e-26 120.9 149 41.6
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 8.5e-26 120.9 149 41.6
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 8.5e-26 120.9 149 41.6
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 8.5e-26 120.9 152 40.8
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 8.5e-26 120.9 152 40.1
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 8.5e-26 120.9 149 40.9
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 1.1e-25 120.6 149 41.6
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 1.1e-25 120.6 149 43.0
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.1e-25 120.6 149 41.6
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 1.1e-25 120.6 149 40.9
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.1e-25 120.6 149 41.6
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 1.4e-25 120.2 144 44.4
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 1.4e-25 120.2 144 44.4
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 1.4e-25 120.2 144 42.4
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 1.4e-25 120.2 149 43.0
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 1.4e-25 120.2 149 43.0
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 1.4e-25 120.2 149 41.6
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 1.4e-25 120.2 149 40.9
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.4e-25 120.2 149 41.6
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 1.9e-25 119.8 149 43.0
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 1.9e-25 119.8 149 42.3
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 1.9e-25 119.8 151 40.4
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 1.9e-25 119.8 149 41.6
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.9e-25 119.8 149 42.3
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 2.5e-25 119.4 149 40.9
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 2.5e-25 119.4 149 43.0
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 3.2e-25 119.0 149 41.6
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 3.2e-25 119.0 149 41.6
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 4.2e-25 118.6 149 40.9
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 4.2e-25 118.6 149 40.9
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 4.2e-25 118.6 149 40.3
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 4.2e-25 118.6 149 40.9
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 5.5e-25 118.2 151 41.7
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 5.5e-25 118.2 151 43.0
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 5.5e-25 118.2 149 40.9
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 5.5e-25 118.2 149 40.9
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 5.5e-25 118.2 149 40.9
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 7.2e-25 117.9 149 40.9
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 7.2e-25 117.9 149 39.6
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 7.2e-25 117.9 149 41.6
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 7.2e-25 117.9 152 40.1
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 7.2e-25 117.9 149 40.3
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 9.4e-25 117.5 149 43.0
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 9.4e-25 117.5 149 40.9
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 9.4e-25 117.5 149 42.3
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 9.4e-25 117.5 149 39.6
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 9.4e-25 117.5 149 42.3
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 1.2e-24 117.1 151 41.1
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 1.2e-24 117.1 149 41.6
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 1.2e-24 117.1 149 40.9
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 1.6e-24 116.7 149 41.6
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 1.6e-24 116.7 149 39.6
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 1.6e-24 116.7 149 42.3
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 2.1e-24 116.3 149 41.6
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.1e-24 116.3 152 39.5
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 2.1e-24 116.3 149 41.6
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 2.1e-24 116.3 149 38.9
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 2.1e-24 116.3 149 39.6
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 3.6e-24 115.5 151 41.7
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 3.6e-24 115.5 149 40.3
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 4.7e-24 115.2 151 40.4
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 4.7e-24 115.2 152 38.8
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 4.7e-24 115.2 149 38.9
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 6.1e-24 114.8 149 40.3
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 6.1e-24 114.8 149 39.6
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 6.1e-24 114.8 149 40.9
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 7.9e-24 114.4 151 41.1
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 7.9e-24 114.4 149 40.9
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 1.0e-23 114.0 152 38.2
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.0e-23 114.0 152 38.2
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.4e-23 113.6 152 37.5
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.4e-23 113.6 152 37.5
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 1.8e-23 113.2 149 40.9
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 2.3e-23 112.8 139 42.4
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 3.0e-23 112.5 151 41.1
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 3.0e-23 112.5 142 40.1
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 3.9e-23 112.1 151 39.7
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 3.9e-23 112.1 152 37.5
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 1.5e-22 110.2 151 39.7
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 1.5e-22 110.2 151 39.7
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 1.5e-22 110.2 151 39.7
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 1.5e-22 110.2 151 39.7
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 1.5e-22 110.2 151 39.7
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 2.6e-22 109.4 151 39.7
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 3.3e-22 109.0 151 39.1
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 3.3e-22 109.0 151 39.1
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 3.3e-22 109.0 99 53.5
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 9.7e-22 107.5 151 38.4
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 1.7e-21 106.7 159 37.7
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 6.3e-21 104.8 152 37.5
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 3.1e-20 102.4 185 34.1
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 4.1e-20 102.1 110 46.4
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 2.0e-19 99.8 99 47.5
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.5e-19 98.6 177 32.2
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 1.3e-18 97.1 103 45.6
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 2.2e-18 96.3 100 49.0
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 3.2e-17 92.4 152 34.9
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 7.2e-17 91.3 85 51.8
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 1.6e-16 90.1 70 57.1
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 8.0e-16 87.8 69 53.6
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 1.4e-15 87.0 146 36.3
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 1.8e-15 86.7 142 33.8
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 5.7e-14 81.6 73 46.6
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 5.7e-14 81.6 67 52.2
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 4.8e-13 78.6 149 33.6
MCO02G383 Micromonas commoda HOM05D004597 ORTHO05D005629 1.1e-12 77.4 132 33.3
Cfa022044 Carpinus fangiana HOM05D004597 ORTHO05D005629 3.5e-11 72.4 109 34.9
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 2.9e-10 69.3 107 36.4
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 1.9e-09 66.6 138 31.2
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 2.1e-08 63.2 103 36.9
Cre02.g095069 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D140777 6.1e-08 61.6 100 35.0
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.0e-07 60.8 138 29.0
AagrBONN_evm.TU.Sc2ySwM_344.1889 Anthoceros agrestis HOM05D004597 ORTHO05D005629 1.4e-07 60.5 50 50.0
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 2.3e-07 59.7 137 27.7
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 3.0e-07 59.3 145 26.9
Lsat_1_v5_gn_5_125061 Lactuca sativa HOM05D004597 ORTHO05D005629 3.0e-07 59.3 44 54.5
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 6.7e-07 58.2 164 28.0
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 9.7e-06 54.3 46 52.2


User provided reference genes

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