Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.8e-122 440.7 221 100.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 7.7e-57 224.6 201 54.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.6e-52 209.5 219 50.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.1e-50 204.1 220 50.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 8.9e-29 131.3 204 40.7
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.7e-27 125.9 203 38.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.3e-24 117.5 210 37.1
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.3e-24 117.5 212 34.9
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.3e-24 117.5 205 36.6
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-24 117.1 205 37.1
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-24 117.1 203 34.5
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.0e-24 115.5 221 34.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.0e-24 115.5 205 36.6
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.0e-24 115.5 205 34.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 6.6e-24 115.2 205 35.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 6.6e-24 115.2 207 36.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 8.6e-24 114.8 190 34.7
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 8.6e-24 114.8 218 35.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.1e-23 114.4 193 37.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.1e-23 114.4 222 33.8
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.5e-23 114.0 206 35.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.9e-23 113.6 206 35.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.9e-23 113.6 208 36.5
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.5e-23 113.2 205 34.6
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.5e-23 113.2 191 35.6
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.5e-23 113.2 203 34.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.5e-23 113.2 205 35.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-23 112.8 208 36.5
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 4.3e-23 112.5 205 34.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.3e-23 112.5 205 34.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 4.3e-23 112.5 211 34.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.3e-23 112.5 205 35.1
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.3e-23 112.5 205 33.7
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.3e-23 112.5 190 37.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 4.3e-23 112.5 204 35.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 5.6e-23 112.1 205 35.6
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.6e-23 112.1 204 35.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 5.6e-23 112.1 193 37.3
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 5.6e-23 112.1 205 35.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.3e-23 111.7 203 33.5
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 7.3e-23 111.7 176 37.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 7.3e-23 111.7 176 37.5
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.3e-23 111.7 171 36.8
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 7.3e-23 111.7 193 36.8
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 7.3e-23 111.7 205 34.1
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 9.5e-23 111.3 204 36.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 9.5e-23 111.3 157 38.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 9.5e-23 111.3 204 34.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 9.5e-23 111.3 188 34.6
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 9.5e-23 111.3 208 34.6
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 9.5e-23 111.3 208 34.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 9.5e-23 111.3 209 34.9
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.2e-22 110.9 214 35.5
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.2e-22 110.9 208 33.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-22 110.9 157 38.9
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.2e-22 110.9 190 36.3
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.2e-22 110.9 205 36.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.2e-22 110.9 205 35.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-22 110.9 205 33.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.2e-22 110.9 203 34.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.2e-22 110.9 205 34.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.6e-22 110.5 188 35.1
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.6e-22 110.5 203 33.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.6e-22 110.5 176 37.5
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.6e-22 110.5 205 34.1
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.1e-22 110.2 188 35.6
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.1e-22 110.2 207 35.7
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.8e-22 109.8 188 35.6
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.8e-22 109.8 188 34.6
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 2.8e-22 109.8 185 36.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.6e-22 109.4 157 38.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.6e-22 109.4 205 35.6
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.6e-22 109.4 205 35.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 3.6e-22 109.4 204 33.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-22 109.4 204 35.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.7e-22 109.0 203 33.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.7e-22 109.0 203 33.0
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.7e-22 109.0 158 40.5
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 4.7e-22 109.0 203 33.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 4.7e-22 109.0 203 33.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 6.2e-22 108.6 204 32.8
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 6.2e-22 108.6 205 33.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.2e-22 108.6 193 35.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.1e-22 108.2 208 34.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 8.1e-22 108.2 205 33.2
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 8.1e-22 108.2 205 35.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.1e-21 107.8 205 34.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-21 107.8 205 35.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-21 107.8 209 34.4
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-21 107.8 205 34.6
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.1e-21 107.8 207 35.7
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.1e-21 107.8 188 34.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-21 107.5 206 34.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-21 107.5 173 38.7
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.4e-21 107.5 207 34.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.4e-21 107.5 205 35.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-21 107.1 158 40.5
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.8e-21 107.1 208 33.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.8e-21 107.1 204 34.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.8e-21 107.1 157 38.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.8e-21 107.1 205 33.7
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.8e-21 107.1 183 38.8
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.3e-21 106.7 174 37.4
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 3.1e-21 106.3 168 38.7
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.0e-21 105.9 190 35.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.0e-21 105.9 190 36.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.0e-21 105.9 205 33.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 6.8e-21 105.1 212 34.0
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 6.8e-21 105.1 174 35.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 6.8e-21 105.1 183 38.8
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-20 104.4 192 37.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.2e-20 104.4 208 34.6
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.2e-20 104.4 176 38.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.6e-20 103.2 204 34.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-20 103.2 205 35.6
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-20 103.2 205 35.6
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 3.4e-20 102.8 183 36.6
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.4e-20 102.4 174 36.8
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.4e-20 102.4 184 35.9
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.4e-20 102.4 204 34.8
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 4.4e-20 102.4 205 35.6
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 9.8e-20 101.3 188 35.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.7e-19 100.5 173 37.0
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.2e-19 100.1 174 35.1
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.9e-19 99.8 232 33.6
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-18 97.1 168 36.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-18 97.1 168 36.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.4e-18 96.7 207 30.4
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 3.2e-18 96.3 178 35.4
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.1e-18 95.9 159 37.1
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.2e-18 94.7 201 33.3
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.2e-17 94.4 162 36.4
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.1e-17 93.6 156 36.5
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 6.0e-17 92.0 156 35.3
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 6.0e-17 92.0 124 39.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.1e-16 89.0 206 32.0
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 4.6e-09 65.9 156 30.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.0e-08 64.7 110 35.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.3e-08 64.3 102 39.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 3.0e-08 63.2 171 28.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-07 61.2 190 27.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 6.2e-06 55.5 110 32.7
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 8.1e-06 55.1 130 32.3


User provided reference genes

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